mRNA_Ecto-sp13_S_contig17011.5002.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17011.5002.1
Unique NamemRNA_Ecto-sp13_S_contig17011.5002.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17011.5002.1 vs. uniprot
Match: D8LDG6_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG6_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.360e-36
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1
Query:    1 AKDFGFTRVFSSEAGQAETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQALT 204
            AKDFGFTRVFSSEAGQ ETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQALT
Sbjct:  134 AKDFGFTRVFSSEAGQVETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQALT 201          
BLAST of mRNA_Ecto-sp13_S_contig17011.5002.1 vs. uniprot
Match: A0A6H5JEB3_9PHAE (Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB3_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.500e-35
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 1
Query:    1 AKDFGFTRVFSSEAGQAETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQALT 204
            AKDFGFTRV SSEAGQ ETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQALT
Sbjct:  135 AKDFGFTRVLSSEAGQVETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQALT 202          
BLAST of mRNA_Ecto-sp13_S_contig17011.5002.1 vs. uniprot
Match: F0XYT0_AURAN (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYT0_AURAN)

HSP 1 Score: 79.0 bits (193), Expect = 1.400e-17
Identity = 36/69 (52.17%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    4 KDFGFTRVFSSEAGQAETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGE---DGSPGLIPQAL 201
            +D+ FTRVF   A QA+ YE+T  PLVD +F+ ++ALLF YG+TNAGK+YT++G+   + + GL+P+AL
Sbjct:    1 RDYTFTRVFDDAATQADVYEATTAPLVDALFAGRSALLFTYGVTNAGKSYTMMGDPEDEAARGLMPRAL 69          
BLAST of mRNA_Ecto-sp13_S_contig17011.5002.1 vs. uniprot
Match: H6S4D1_PLAVT (Kinesin (Fragment) n=1 Tax=Plasmopara viticola TaxID=143451 RepID=H6S4D1_PLAVT)

HSP 1 Score: 79.7 bits (195), Expect = 1.020e-16
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 AKDFGFTRVFSSEAGQAETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQAL 201
            A +F F+R+F  E  Q E +E+T RP++D  F  ++ L+FAYG+TN+GKTYTV G   +PG++PQAL
Sbjct:  118 ATNFHFSRIFRQETQQKELFEATTRPVLDAAFEGKSGLVFAYGVTNSGKTYTVSGSSEAPGVLPQAL 184          
BLAST of mRNA_Ecto-sp13_S_contig17011.5002.1 vs. uniprot
Match: A0A2D4BW77_PYTIN (Kinesin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW77_PYTIN)

HSP 1 Score: 80.1 bits (196), Expect = 5.970e-16
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   16 FTRVFSSEAGQAETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQAL 201
            F+R+FS+   Q E +E+T RP++D  F+ Q+ L+FAYG+TN+GKTYT+ G D  PG++P+AL
Sbjct:  142 FSRIFSATTAQQELFEATTRPVLDAAFAGQSGLVFAYGVTNSGKTYTITGTDAQPGVLPRAL 203          
BLAST of mRNA_Ecto-sp13_S_contig17011.5002.1 vs. uniprot
Match: H3H478_PHYRM (Kinesin-like protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H478_PHYRM)

HSP 1 Score: 79.7 bits (195), Expect = 8.090e-16
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 AKDFGFTRVFSSEAGQAETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQAL 201
            A +F F+R+FS E  Q E +E+T +P++D  F  ++ L+FAYG+TN+GKTYT+ G   +PG++PQAL
Sbjct:   95 ATNFHFSRIFSQETQQTELFEATTQPVLDAAFGGKSGLVFAYGVTNSGKTYTISGTTDAPGVLPQAL 161          
BLAST of mRNA_Ecto-sp13_S_contig17011.5002.1 vs. uniprot
Match: H3HDV1_PHYRM (Kinesin motor domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDV1_PHYRM)

HSP 1 Score: 79.7 bits (195), Expect = 8.110e-16
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 AKDFGFTRVFSSEAGQAETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQAL 201
            A +F F+R+FS E  Q E +E+T +P++D  F  ++ L+FAYG+TN+GKTYT+ G   +PG++PQAL
Sbjct:  135 ATNFHFSRIFSQETQQTELFEATTQPVLDAAFGGKSGLVFAYGVTNSGKTYTISGTTDAPGVLPQAL 201          
BLAST of mRNA_Ecto-sp13_S_contig17011.5002.1 vs. uniprot
Match: A0A3M6VCW9_9STRA (Kinesin-like protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCW9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 8.130e-16
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 AKDFGFTRVFSSEAGQAETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQAL 201
            A  F F+R+F  E  Q E +E+T RP++D  F  ++ L+FAYG+TN+GKTYT+ G   +PGL+PQ+L
Sbjct:  116 ATSFHFSRIFKQETHQTELFEATTRPVLDAAFDGKSGLVFAYGVTNSGKTYTISGTSDAPGLLPQSL 182          
BLAST of mRNA_Ecto-sp13_S_contig17011.5002.1 vs. uniprot
Match: A0A7S3JTL2_9STRA (Kinesin-like protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTL2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 8.210e-16
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 AKDFGFTRVFSSEAGQAETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLG--EDGSPGLIPQAL 201
            AK++ F+RVF  E  QA+ Y  T RPLVD +F  Q++L+FAYG+TNAGK+YT++G  E    GL+P+AL
Sbjct:  120 AKEYEFSRVFGPEENQAQIYVETTRPLVDALFKGQSSLIFAYGVTNAGKSYTIMGSGESERSGLLPRAL 188          
BLAST of mRNA_Ecto-sp13_S_contig17011.5002.1 vs. uniprot
Match: W2R9F5_PHYPN (Kinesin-like protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2R9F5_PHYPN)

HSP 1 Score: 79.3 bits (194), Expect = 1.110e-15
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 AKDFGFTRVFSSEAGQAETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQAL 201
            A  F F+R+F  E  Q E +E+T RP++D  F  ++ L+FAYG+TN+GKTYT+ G   +PG++PQAL
Sbjct:  137 ATSFQFSRIFRQETQQTELFEATTRPVLDAAFDGKSGLVFAYGVTNSGKTYTISGSSEAPGVLPQAL 203          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17011.5002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDG6_ECTSI2.360e-3698.53Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JEB3_9PHAE1.500e-3597.06Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1... [more]
F0XYT0_AURAN1.400e-1752.17Kinesin motor domain-containing protein (Fragment)... [more]
H6S4D1_PLAVT1.020e-1650.75Kinesin (Fragment) n=1 Tax=Plasmopara viticola Tax... [more]
A0A2D4BW77_PYTIN5.970e-1651.61Kinesin-like protein n=1 Tax=Pythium insidiosum Ta... [more]
H3H478_PHYRM8.090e-1649.25Kinesin-like protein n=1 Tax=Phytophthora ramorum ... [more]
H3HDV1_PHYRM8.110e-1649.25Kinesin motor domain-containing protein n=1 Tax=Ph... [more]
A0A3M6VCW9_9STRA8.130e-1649.25Kinesin-like protein n=1 Tax=Peronospora effusa Ta... [more]
A0A7S3JTL2_9STRA8.210e-1653.62Kinesin-like protein n=1 Tax=Aureoumbra lagunensis... [more]
W2R9F5_PHYPN1.110e-1549.25Kinesin-like protein n=8 Tax=Phytophthora TaxID=47... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17011contigEcto-sp13_S_contig17011:18..224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score137.9
Seed ortholog evalue1.8e-30
Seed eggNOG ortholog2880.D8LDG6
Model size207
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
Cds size207
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462892.0127144-CDS-Ecto-sp13_S_contig17011:17..2241681462892.0127144-CDS-Ecto-sp13_S_contig17011:17..224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17011 18..224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17011.5002.1prot_Ecto-sp13_S_contig17011.5002.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17011 18..224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17011.5002.1

>prot_Ecto-sp13_S_contig17011.5002.1 ID=prot_Ecto-sp13_S_contig17011.5002.1|Name=mRNA_Ecto-sp13_S_contig17011.5002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
AKDFGFTRVFSSEAGQAETYESTMRPLVDDVFSAQNALLFAYGMTNAGKT
YTVLGEDGSPGLIPQALT*
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mRNA from alignment at Ecto-sp13_S_contig17011:18..224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17011.5002.1 ID=mRNA_Ecto-sp13_S_contig17011.5002.1|Name=mRNA_Ecto-sp13_S_contig17011.5002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17011:18..224+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAAGGACTTCGGGTTCACCCGAGTCTTCAGCTCCGAGGCGGGCCAGGC GGAGACGTACGAGTCGACGATGCGGCCGCTGGTGGACGACGTCTTCTCCG CGCAGAACGCGTTGCTGTTCGCGTACGGCATGACCAACGCGGGGAAGACG TACACCGTGCTGGGCGAGGACGGGAGCCCGGGGCTTATCCCGCAGGCCCT AACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17011:18..224+

>mRNA_Ecto-sp13_S_contig17011.5002.1 ID=mRNA_Ecto-sp13_S_contig17011.5002.1|Name=mRNA_Ecto-sp13_S_contig17011.5002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17011:18..224+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAAGGACTTCGGGTTCACCCGAGTCTTCAGCTCCGAGGCGGGCCAGGC
GGAGACGTACGAGTCGACGATGCGGCCGCTGGTGGACGACGTCTTCTCCG
CGCAGAACGCGTTGCTGTTCGCGTACGGCATGACCAACGCGGGGAAGACG
TACACCGTGCTGGGCGAGGACGGGAGCCCGGGGCTTATCCCGCAGGCCCT
AACGTGA
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