prot_Ecto-sp13_S_contig98735.21518.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig98735.21518.1
Unique Name	prot_Ecto-sp13_S_contig98735.21518.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	170

Homology

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BLAST of mRNA_Ecto-sp13_S_contig98735.21518.1 vs. uniprot
Match: A0A0K6INB7_9GAMM (F plasmid transfer operon, TraF, protein n=2 Tax=Marinomonas TaxID=28253 RepID=A0A0K6INB7_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 1.460e-6
Identity = 43/170 (25.29%), Postives = 73/170 (42.94%), Query Frame = 0

Query:    3 LTYSRELARGWRGSLQAGISLHYHDYDLSNGAAAVQATSADSVVADA---KVAAKSYTVNETALTADIGLAWVSPLNFVIGITAKNLGEPTFEYSRLPTDCAGIDASSKAGANCRATAFFGSRLEKNRDVDLNTQITIDGSYRIPSTNIILMAGADTNASRNITGESQRW 169
            L YS ++     G+L  G  L+ H   L  G A     S+D   +DA       +  T  +  L  D+G  W +  ++ +G  A NL EP+FEY +LP++CA      +   N          +E N +  +  Q T++    +    + L A  + N   ++ G+  +W
Sbjct:  195 LGYSTDVYSSDAGTLVLGTKLNAHSVTL--GKALQHLESSDDDTSDAFXXXXXXQQETTTDFGL--DLGAIWAAE-HYQLGFQATNLNEPSFEYGKLPSNCATESPIDQPSCNAALEFAQKGEIELNEEYTMERQFTVEALTFVFDRQLSLAASYELNEVADLVGDEYQW 359

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig98735.21518.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig98735.21518.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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POSITION

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Match Name	E-value	Identity	Description
A0A0K6INB7_9GAMM	1.460e-6	25.29	F plasmid transfer operon, TraF, protein n=2 Tax=M...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032811	Putative conjugal transfer protein TraF-related	PFAM	PF13729	TraF_2	coord: 1..144 e-value: 5.2E-18 score: 65.4

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig98735	contig	Ecto-sp13_S_contig98735:8..517 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig98735.21518.1	mRNA_Ecto-sp13_S_contig98735.21518.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig98735 8..517 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig98735.21518.1 ID=prot_Ecto-sp13_S_contig98735.21518.1|Name=mRNA_Ecto-sp13_S_contig98735.21518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
LSLTYSRELARGWRGSLQAGISLHYHDYDLSNGAAAVQATSADSVVADAK
VAAKSYTVNETALTADIGLAWVSPLNFVIGITAKNLGEPTFEYSRLPTDC
AGIDASSKAGANCRATAFFGSRLEKNRDVDLNTQITIDGSYRIPSTNIIL
MAGADTNASRNITGESQRWS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032811	Put_conjugal_transfer