prot_Ecto-sp13_S_contig975.21396.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig975.21396.1
Unique Nameprot_Ecto-sp13_S_contig975.21396.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length59
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: D7FQJ6_ECTSI (Early-responsive to dehydration protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ6_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.830e-26
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 0 
Query:    1 MQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 59
            MQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSV FTLLGETLPKV
Sbjct:  820 MQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVFFTLLGETLPKV 878
[Close]
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A835Z3W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.840e-5
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 0 
Query:    4 LSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 59
            LSRYF FQV+NVFLVTT+AG   + L+          ++D PS   TLLGE+LPK+
Sbjct:  511 LSRYFYFQVINVFLVTTIAGTVFDTLSL---------IVDSPSKALTLLGESLPKM 557
[Close]
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A6H5JKU1_9PHAE (ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKU1_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 3.900e-5
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 0 
Query:    4 LSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 59
            LSRYF FQ++NVFLVTTVA   ++ +++         ++++P+  FTLLGE LPKV
Sbjct:  670 LSRYFYFQIVNVFLVTTVANSILDTISE---------IVEEPTKTFTLLGEALPKV 716
[Close]
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A836CHQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ4_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 5.340e-5
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 0 
Query:    4 LSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 59
            L R F FQ++NVFLVTTVAG   ++L          ++ + PS  FTLLGETLPKV
Sbjct:  586 LGRLFQFQIINVFLVTTVAGSLFDVLN---------KIANHPSDSFTLLGETLPKV 632
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQJ6_ECTSI3.830e-2698.31Early-responsive to dehydration protein-related n=... [more]
A0A835Z3W6_9STRA2.840e-551.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JKU1_9PHAE3.900e-548.21ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A836CHQ4_9STRA5.340e-551.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003864Calcium-dependent channel, 7TM region, putative phosphatePFAMPF02714RSN1_7TMcoord: 2..58
e-value: 3.7E-7
score: 29.7
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..59
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig975contigEcto-sp13_S_contig975:536..1243 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig975.21396.1mRNA_Ecto-sp13_S_contig975.21396.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig975 536..1270 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig975.21396.1 ID=prot_Ecto-sp13_S_contig975.21396.1|Name=mRNA_Ecto-sp13_S_contig975.21396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFT
LLGETLPKV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003864RSN1_7TM