mRNA_Ecto-sp13_S_contig975.21396.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig975.21396.1
Unique NamemRNA_Ecto-sp13_S_contig975.21396.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: D7FQJ6_ECTSI (Early-responsive to dehydration protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ6_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.110e-33
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1
Query:    1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
            GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSV FTLLGETLPKV
Sbjct:  811 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVFFTLLGETLPKV 878          
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A835Z3W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.350e-9
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
            G+ AESW Q   LSRYF FQV+NVFLVTT+AG   + L+          ++D PS   TLLGE+LPK+
Sbjct:  499 GSAAESWNQKVALSRYFYFQVINVFLVTTIAGTVFDTLSL---------IVDSPSKALTLLGESLPKM 557          
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A836CHQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.790e-8
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
            G +A S IQ+  L R F FQ++NVFLVTTVAG   ++L          ++ + PS  FTLLGETLPKV
Sbjct:  574 GIIAHSRIQLVVLGRLFQFQIINVFLVTTVAGSLFDVLN---------KIANHPSDSFTLLGETLPKV 632          
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A6H5JKU1_9PHAE (ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKU1_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 5.170e-7
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
            G  AES  Q   LSRYF FQ++NVFLVTTVA   ++ +++         ++++P+  FTLLGE LPKV
Sbjct:  658 GFPAESRNQQAVLSRYFYFQIVNVFLVTTVANSILDTISE---------IVEEPTKTFTLLGEALPKV 716          
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: B7FVF7_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVF7_PHATC)

HSP 1 Score: 51.6 bits (122), Expect = 6.200e-6
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
            G +A S  QMQ  SRYF FQVLNVFLVTT+AG   +          V  ++++P   F +LG +LP++
Sbjct:  391 GRIAFSDAQMQAFSRYFLFQVLNVFLVTTIAGSIFDT---------VAIIIENPESAFEMLGNSLPRM 449          
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: F0Y5Y8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5Y8_AURAN)

HSP 1 Score: 51.2 bits (121), Expect = 8.700e-6
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
            G L+ S   +  LSRY++FQ+ NV LVTT+AG  V+ L         ++++DDP    +LLGE+LP+V
Sbjct:  877 GTLSWSENTLTQLSRYYSFQITNVLLVTTIAGSLVKCL---------QKIIDDPQATLSLLGESLPQV 935          
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A6A6V010_9PLEO (DUF221-domain-containing protein n=1 Tax=Sporormia fimetaria CBS 119925 TaxID=1340428 RepID=A0A6A6V010_9PLEO)

HSP 1 Score: 50.8 bits (120), Expect = 1.180e-5
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPK 201
            G++  S I++QT S YF FQV+ VFL+TT+   A  ++ Q         +++DP ++ TLL E LPK
Sbjct:  476 GHVTRSQIELQTQSWYFAFQVIQVFLITTMTSAATTVVDQ---------VLEDPGMVITLLSENLPK 533          
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A7S1V538_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V538_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.880e-5
Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
            G ++ S +QM+  SRYF FQV+NVFLVTT+AG   +          +  ++D+P   F +LG +LP++
Sbjct:   44 GLVSFSDVQMKAFSRYFLFQVVNVFLVTTIAGSIFDT---------IAIIIDNPETAFKILGNSLPRM 102          
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A7S3QEH8_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QEH8_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.230e-5
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
            G L+ S +QM+  SRYF FQVLNVFLVT +AG   + L           ++++P  +F +LG +LP++
Sbjct:  705 GMLSFSEVQMKAFSRYFMFQVLNVFLVTAIAGSIFDTLAI---------IIENPESMFEMLGNSLPRM 763          
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: B8C594_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C594_THAPS)

HSP 1 Score: 49.3 bits (116), Expect = 4.060e-5
Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
            G ++ S +QM+  SRYFTFQVLN+FLVT++AG   + L           +++ P   F +LG +LP++
Sbjct:  388 GIMSFSEVQMKAFSRYFTFQVLNIFLVTSIAGSIFDTLAI---------IIETPESAFEMLGNSLPRM 446          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FQJ6_ECTSI2.110e-3398.53Early-responsive to dehydration protein-related n=... [more]
A0A835Z3W6_9STRA1.350e-951.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHQ4_9STRA5.790e-850.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JKU1_9PHAE5.170e-747.06ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
B7FVF7_PHATC6.200e-644.12Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
F0Y5Y8_AURAN8.700e-642.65Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6A6V010_9PLEO1.180e-540.30DUF221-domain-containing protein n=1 Tax=Sporormia... [more]
A0A7S1V538_9STRA1.880e-539.71Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S3QEH8_9STRA2.230e-541.18Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
B8C594_THAPS4.060e-539.71Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig975contigEcto-sp13_S_contig975:536..1270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score109.8
Seed ortholog evalue4.5e-22
Seed eggNOG ortholog2880.D7FQJ6
Model size204
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
Cds size177
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464238.526031-CDS-Ecto-sp13_S_contig975:535..6311681464238.526031-CDS-Ecto-sp13_S_contig975:535..631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig975 536..631 -
1681464238.538349-CDS-Ecto-sp13_S_contig975:1162..12431681464238.538349-CDS-Ecto-sp13_S_contig975:1162..1243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig975 1163..1243 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464238.5644903-UTR-Ecto-sp13_S_contig975:1243..12701681464238.5644903-UTR-Ecto-sp13_S_contig975:1243..1270Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig975 1244..1270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig975.21396.1prot_Ecto-sp13_S_contig975.21396.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig975 536..1243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig975.21396.1

>prot_Ecto-sp13_S_contig975.21396.1 ID=prot_Ecto-sp13_S_contig975.21396.1|Name=mRNA_Ecto-sp13_S_contig975.21396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFT
LLGETLPKV
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mRNA from alignment at Ecto-sp13_S_contig975:536..1270-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig975.21396.1 ID=mRNA_Ecto-sp13_S_contig975.21396.1|Name=mRNA_Ecto-sp13_S_contig975.21396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig975:536..1270- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAATCTGGCGGAGAGCTGGATCCAGATGCAGACCCTCTCTCGATACTT CACGTTCCAGGTCCTCAACGTATTCCTCGTCACGACTGTCGCCGGGTTCG CGGTCGAGGTGCGTGCTTGCCTCGCCTCGCCTCGCCTTGCCTTGCCTCGC CTCGCCTCGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGC CTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGC CTTGCCTTGCCTTGCCTTGCCGTGGGACTTGTTTTGTTTTTGCGCTGCGA GCGCGTGCCACTACTGCTCCTGTCGTCGGTGGTGGTGGTGATGATGATGG TGCTTATGATTGTGAGGTTGGCGGTTGGTGATTCTCGGCGATGTTGGCGT TTGTTGTTGCTGTGTCGTTGTGGTTGTCGCCGTCGTAGGTGCTGTCGTTG CAACAGGCTTCCTCCGCTGCTGCTGTTGCTGGTACCGGTGCGTTGTTCCC TGTTGCTGGACGGGTGCACAAAGAAATTGCTTGAAATCTCGTTGAAATGT TCAAGTCAATTGAAATCATTTACTTTTTCTTACCCCCGGGGCTTTTTTTG CCAATTTCCCAAATCTTCTATTTTTTCCCGCCGCCGCAGATCTTGACACA GCAGCTGCACGCGCAGATCGTGAGACGGCTCATGGACGATCCTTCCGTGC TCTTCACGCTCTTGGGAGAAACTCTGCCGAAGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig975:536..1270-

>mRNA_Ecto-sp13_S_contig975.21396.1 ID=mRNA_Ecto-sp13_S_contig975.21396.1|Name=mRNA_Ecto-sp13_S_contig975.21396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig975:536..1270- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGACCCTCTCTCGATACTTCACGTTCCAGGTCCTCAACGTATTCCT
CGTCACGACTGTCGCCGGGTTCGCGGTCGAGATCTTGACACAGCAGCTGC
ACGCGCAGATCGTGAGACGGCTCATGGACGATCCTTCCGTGCTCTTCACG
CTCTTGGGAGAAACTCTGCCGAAGGTC
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