mRNA_Ecto-sp13_S_contig975.21396.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: D7FQJ6_ECTSI (Early-responsive to dehydration protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQJ6_ECTSI) HSP 1 Score: 129 bits (325), Expect = 2.110e-33 Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 1
Query: 1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSV FTLLGETLPKV
Sbjct: 811 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVFFTLLGETLPKV 878
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A835Z3W6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W6_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.350e-9 Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
G+ AESW Q LSRYF FQV+NVFLVTT+AG + L+ ++D PS TLLGE+LPK+
Sbjct: 499 GSAAESWNQKVALSRYFYFQVINVFLVTTIAGTVFDTLSL---------IVDSPSKALTLLGESLPKM 557
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A836CHQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ4_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 5.790e-8 Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
G +A S IQ+ L R F FQ++NVFLVTTVAG ++L ++ + PS FTLLGETLPKV
Sbjct: 574 GIIAHSRIQLVVLGRLFQFQIINVFLVTTVAGSLFDVLN---------KIANHPSDSFTLLGETLPKV 632
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A6H5JKU1_9PHAE (ERD protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKU1_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 5.170e-7 Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
G AES Q LSRYF FQ++NVFLVTTVA ++ +++ ++++P+ FTLLGE LPKV
Sbjct: 658 GFPAESRNQQAVLSRYFYFQIVNVFLVTTVANSILDTISE---------IVEEPTKTFTLLGEALPKV 716
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: B7FVF7_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVF7_PHATC) HSP 1 Score: 51.6 bits (122), Expect = 6.200e-6 Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 1
Query: 1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
G +A S QMQ SRYF FQVLNVFLVTT+AG + V ++++P F +LG +LP++
Sbjct: 391 GRIAFSDAQMQAFSRYFLFQVLNVFLVTTIAGSIFDT---------VAIIIENPESAFEMLGNSLPRM 449
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: F0Y5Y8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5Y8_AURAN) HSP 1 Score: 51.2 bits (121), Expect = 8.700e-6 Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
G L+ S + LSRY++FQ+ NV LVTT+AG V+ L ++++DDP +LLGE+LP+V
Sbjct: 877 GTLSWSENTLTQLSRYYSFQITNVLLVTTIAGSLVKCL---------QKIIDDPQATLSLLGESLPQV 935
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A6A6V010_9PLEO (DUF221-domain-containing protein n=1 Tax=Sporormia fimetaria CBS 119925 TaxID=1340428 RepID=A0A6A6V010_9PLEO) HSP 1 Score: 50.8 bits (120), Expect = 1.180e-5 Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPK 201
G++ S I++QT S YF FQV+ VFL+TT+ A ++ Q +++DP ++ TLL E LPK
Sbjct: 476 GHVTRSQIELQTQSWYFAFQVIQVFLITTMTSAATTVVDQ---------VLEDPGMVITLLSENLPK 533
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A7S1V538_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V538_9STRA) HSP 1 Score: 49.7 bits (117), Expect = 1.880e-5 Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
G ++ S +QM+ SRYF FQV+NVFLVTT+AG + + ++D+P F +LG +LP++
Sbjct: 44 GLVSFSDVQMKAFSRYFLFQVVNVFLVTTIAGSIFDT---------IAIIIDNPETAFKILGNSLPRM 102
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: A0A7S3QEH8_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QEH8_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 2.230e-5 Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
G L+ S +QM+ SRYF FQVLNVFLVT +AG + L ++++P +F +LG +LP++
Sbjct: 705 GMLSFSEVQMKAFSRYFMFQVLNVFLVTAIAGSIFDTLAI---------IIENPESMFEMLGNSLPRM 763
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Match: B8C594_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C594_THAPS) HSP 1 Score: 49.3 bits (116), Expect = 4.060e-5 Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 1 GNLAESWIQMQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTLLGETLPKV 204
G ++ S +QM+ SRYFTFQVLN+FLVT++AG + L +++ P F +LG +LP++
Sbjct: 388 GIMSFSEVQMKAFSRYFTFQVLNIFLVTSIAGSIFDTLAI---------IIETPESAFEMLGNSLPRM 446 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig975.21396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig975.21396.1 >prot_Ecto-sp13_S_contig975.21396.1 ID=prot_Ecto-sp13_S_contig975.21396.1|Name=mRNA_Ecto-sp13_S_contig975.21396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp MQTLSRYFTFQVLNVFLVTTVAGFAVEILTQQLHAQIVRRLMDDPSVLFTback to top mRNA from alignment at Ecto-sp13_S_contig975:536..1270- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig975.21396.1 ID=mRNA_Ecto-sp13_S_contig975.21396.1|Name=mRNA_Ecto-sp13_S_contig975.21396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig975:536..1270- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig975:536..1270- >mRNA_Ecto-sp13_S_contig975.21396.1 ID=mRNA_Ecto-sp13_S_contig975.21396.1|Name=mRNA_Ecto-sp13_S_contig975.21396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig975:536..1270- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |