prot_Ecto-sp13_S_contig96807.21314.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig96807.21314.1
Unique Nameprot_Ecto-sp13_S_contig96807.21314.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length45
Homology
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: A0A017HLM1_9RHOB (Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Rubellimicrobium mesophilum DSM 19309 TaxID=442562 RepID=A0A017HLM1_9RHOB)

HSP 1 Score: 59.7 bits (143), Expect = 3.000e-9
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 0
Query:    4 KLLAAAAMLASVSTPALALD-----IVFTHHSSASNTFWQAVKKGFD 45
            KL   AA+LASVS PALA D     IVFTHHSSASNTFWQAV+KGF+
Sbjct:    6 KLALGAALLASVSGPALAQDDSTINIVFTHHSSASNTFWQAVQKGFE 52          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: A0A3N2R680_9RHOB (Sugar ABC transporter substrate-binding protein n=1 Tax=Histidinibacterium lentulum TaxID=2480588 RepID=A0A3N2R680_9RHOB)

HSP 1 Score: 53.9 bits (128), Expect = 3.450e-7
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    8 AAAMLASVSTPALALD----IVFTHHSSASNTFWQAVKKGFD 45
            AAAM A +ST A+A D    IVFTHHSSASN FWQAV+KGFD
Sbjct:    7 AAAMAALMSTAAMAQDGPMNIVFTHHSSASNPFWQAVQKGFD 48          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: UPI00191B38C4 (sugar ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. KVB221 TaxID=2801340 RepID=UPI00191B38C4)

HSP 1 Score: 53.5 bits (127), Expect = 4.740e-7
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0
Query:    9 AAMLASVSTPALA--LDIVFTHHSSASNTFWQAVKKGFD 45
            A +LAS +  A A  L+IVFTHHSSASNTFWQAVKKGFD
Sbjct:   12 AGLLASTALGARAEGLNIVFTHHSSASNTFWQAVKKGFD 50          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: F7Y4J7_MESOW (Peripla_BP_4 domain-containing protein n=107 Tax=Phyllobacteriaceae TaxID=69277 RepID=F7Y4J7_MESOW)

HSP 1 Score: 53.1 bits (126), Expect = 6.490e-7
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0
Query:   22 LDIVFTHHSSASNTFWQAVKKGFD 45
            L+IVFTHHSSASNTFWQAVKKGFD
Sbjct:   26 LNIVFTHHSSASNTFWQAVKKGFD 49          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: A0A833GBB2_9HYPH (Sugar ABC transporter substrate-binding protein n=1 Tax=Bauldia sp. TaxID=2575872 RepID=A0A833GBB2_9HYPH)

HSP 1 Score: 53.1 bits (126), Expect = 6.490e-7
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    2 KLKLLAAAAMLA-SVSTPALALD---IVFTHHSSASNTFWQAVKKGFD 45
            +LKLL +AA +A  ++TPALA D   I FT HSS SNTFWQAVKKGFD
Sbjct:    3 RLKLLTSAATIAIGLATPALAADPITIAFTIHSSPSNTFWQAVKKGFD 50          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: A0A395L0F5_9HYPH (Peripla_BP_4 domain-containing protein n=8 Tax=Proteobacteria TaxID=1224 RepID=A0A395L0F5_9HYPH)

HSP 1 Score: 53.1 bits (126), Expect = 6.490e-7
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0
Query:   22 LDIVFTHHSSASNTFWQAVKKGFD 45
            L+IVFTHHSSASNTFWQAVKKGFD
Sbjct:   27 LNIVFTHHSSASNTFWQAVKKGFD 50          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: UPI001783190A (sugar ABC transporter substrate-binding protein n=4 Tax=Rhizobium TaxID=379 RepID=UPI001783190A)

HSP 1 Score: 53.1 bits (126), Expect = 6.490e-7
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0
Query:   22 LDIVFTHHSSASNTFWQAVKKGFD 45
            L+IVFTHHSSASNTFWQAVKKGFD
Sbjct:   27 LNIVFTHHSSASNTFWQAVKKGFD 50          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: UPI0011EACCC5 (sugar ABC transporter substrate-binding protein n=3 Tax=Rhodobacteraceae TaxID=31989 RepID=UPI0011EACCC5)

HSP 1 Score: 53.1 bits (126), Expect = 6.490e-7
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0
Query:    7 AAAAMLASVSTPALA---LDIVFTHHSSASNTFWQAVKKGFD 45
            A AA+L + + P  A   LDIVF HHSSASNTFWQAVKKG+D
Sbjct:   10 ATAALLMTAALPVRAQDGLDIVFAHHSSASNTFWQAVKKGYD 51          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: A0A640VJ57_9RHOB (ABC transporter substrate-binding protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A640VJ57_9RHOB)

HSP 1 Score: 52.4 bits (124), Expect = 1.220e-6
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 0
Query:   22 LDIVFTHHSSASNTFWQAVKKGFD 45
            ++IVFTHHSSASNTFWQAVKKGFD
Sbjct:   24 MNIVFTHHSSASNTFWQAVKKGFD 47          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: U4E9M1_9VIBR (Autoinducer 2-binding periplasmic protein LuxP n=10 Tax=Vibrio TaxID=662 RepID=U4E9M1_9VIBR)

HSP 1 Score: 52.0 bits (123), Expect = 1.670e-6
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0
Query:    5 LLAAAAMLASVSTPALALDIVFTHHSSASNTFWQAVKKGFD 45
            L+A +A++ S +  A  L++VFTHHSSASN FWQAVKKGFD
Sbjct:    7 LIALSAVMLSSAAWAKPLNVVFTHHSSASNPFWQAVKKGFD 47          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A017HLM1_9RHOB3.000e-972.34Sugar ABC transporter, periplasmic sugar-binding p... [more]
A0A3N2R680_9RHOB3.450e-771.43Sugar ABC transporter substrate-binding protein n=... [more]
UPI00191B38C44.740e-774.36sugar ABC transporter substrate-binding protein n=... [more]
F7Y4J7_MESOW6.490e-795.83Peripla_BP_4 domain-containing protein n=107 Tax=P... [more]
A0A833GBB2_9HYPH6.490e-766.67Sugar ABC transporter substrate-binding protein n=... [more]
A0A395L0F5_9HYPH6.490e-795.83Peripla_BP_4 domain-containing protein n=8 Tax=Pro... [more]
UPI001783190A6.490e-795.83sugar ABC transporter substrate-binding protein n=... [more]
UPI0011EACCC56.490e-766.67sugar ABC transporter substrate-binding protein n=... [more]
A0A640VJ57_9RHOB1.220e-691.67ABC transporter substrate-binding protein n=2 Tax=... [more]
U4E9M1_9VIBR1.670e-663.41Autoinducer 2-binding periplasmic protein LuxP n=1... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..45
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.73
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96807contigEcto-sp13_S_contig96807:3..137 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96807.21314.1mRNA_Ecto-sp13_S_contig96807.21314.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig96807 3..143 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig96807.21314.1 ID=prot_Ecto-sp13_S_contig96807.21314.1|Name=mRNA_Ecto-sp13_S_contig96807.21314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
MKLKLLAAAAMLASVSTPALALDIVFTHHSSASNTFWQAVKKGFD
back to top