mRNA_Ecto-sp13_S_contig96807.21314.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig96807.21314.1
Unique NamemRNA_Ecto-sp13_S_contig96807.21314.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: A0A017HLM1_9RHOB (Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Rubellimicrobium mesophilum DSM 19309 TaxID=442562 RepID=A0A017HLM1_9RHOB)

HSP 1 Score: 59.7 bits (143), Expect = 3.280e-9
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1
Query:   16 KLLAAAAMLASVSTPALALD-----IVFTHHSSASNTFWQAVKKGFD 141
            KL   AA+LASVS PALA D     IVFTHHSSASNTFWQAV+KGF+
Sbjct:    6 KLALGAALLASVSGPALAQDDSTINIVFTHHSSASNTFWQAVQKGFE 52          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: A0A3N2R680_9RHOB (Sugar ABC transporter substrate-binding protein n=1 Tax=Histidinibacterium lentulum TaxID=2480588 RepID=A0A3N2R680_9RHOB)

HSP 1 Score: 53.9 bits (128), Expect = 3.760e-7
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   28 AAAMLASVSTPALALD----IVFTHHSSASNTFWQAVKKGFD 141
            AAAM A +ST A+A D    IVFTHHSSASN FWQAV+KGFD
Sbjct:    7 AAAMAALMSTAAMAQDGPMNIVFTHHSSASNPFWQAVQKGFD 48          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: UPI00191B38C4 (sugar ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. KVB221 TaxID=2801340 RepID=UPI00191B38C4)

HSP 1 Score: 53.5 bits (127), Expect = 5.170e-7
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   31 AAMLASVSTPALA--LDIVFTHHSSASNTFWQAVKKGFD 141
            A +LAS +  A A  L+IVFTHHSSASNTFWQAVKKGFD
Sbjct:   12 AGLLASTALGARAEGLNIVFTHHSSASNTFWQAVKKGFD 50          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: F7Y4J7_MESOW (Peripla_BP_4 domain-containing protein n=107 Tax=Phyllobacteriaceae TaxID=69277 RepID=F7Y4J7_MESOW)

HSP 1 Score: 53.1 bits (126), Expect = 7.080e-7
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1
Query:   70 LDIVFTHHSSASNTFWQAVKKGFD 141
            L+IVFTHHSSASNTFWQAVKKGFD
Sbjct:   26 LNIVFTHHSSASNTFWQAVKKGFD 49          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: A0A833GBB2_9HYPH (Sugar ABC transporter substrate-binding protein n=1 Tax=Bauldia sp. TaxID=2575872 RepID=A0A833GBB2_9HYPH)

HSP 1 Score: 53.1 bits (126), Expect = 7.090e-7
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   10 KLKLLAAAAMLA-SVSTPALALD---IVFTHHSSASNTFWQAVKKGFD 141
            +LKLL +AA +A  ++TPALA D   I FT HSS SNTFWQAVKKGFD
Sbjct:    3 RLKLLTSAATIAIGLATPALAADPITIAFTIHSSPSNTFWQAVKKGFD 50          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: A0A395L0F5_9HYPH (Peripla_BP_4 domain-containing protein n=8 Tax=Proteobacteria TaxID=1224 RepID=A0A395L0F5_9HYPH)

HSP 1 Score: 53.1 bits (126), Expect = 7.090e-7
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1
Query:   70 LDIVFTHHSSASNTFWQAVKKGFD 141
            L+IVFTHHSSASNTFWQAVKKGFD
Sbjct:   27 LNIVFTHHSSASNTFWQAVKKGFD 50          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: UPI001783190A (sugar ABC transporter substrate-binding protein n=4 Tax=Rhizobium TaxID=379 RepID=UPI001783190A)

HSP 1 Score: 53.1 bits (126), Expect = 7.090e-7
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1
Query:   70 LDIVFTHHSSASNTFWQAVKKGFD 141
            L+IVFTHHSSASNTFWQAVKKGFD
Sbjct:   27 LNIVFTHHSSASNTFWQAVKKGFD 50          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: UPI0011EACCC5 (sugar ABC transporter substrate-binding protein n=3 Tax=Rhodobacteraceae TaxID=31989 RepID=UPI0011EACCC5)

HSP 1 Score: 53.1 bits (126), Expect = 7.090e-7
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   25 AAAAMLASVSTPALA---LDIVFTHHSSASNTFWQAVKKGFD 141
            A AA+L + + P  A   LDIVF HHSSASNTFWQAVKKG+D
Sbjct:   10 ATAALLMTAALPVRAQDGLDIVFAHHSSASNTFWQAVKKGYD 51          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: UPI0014128227 (sugar ABC transporter substrate-binding protein n=1 Tax=Rubellimicrobium sp. CFH 75288 TaxID=2697034 RepID=UPI0014128227)

HSP 1 Score: 53.1 bits (126), Expect = 7.110e-7
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 KTMKLKLLAAAAMLASVSTPALALD-----IVFTHHSSASNTFWQAVKKGFD 141
            +T K +LLAAA +LA  +T  LA D     IVFTHHSSASNTFWQAV++GF+
Sbjct:    3 RTAKTRLLAAA-LLAGCATGVLAQDDAPIEIVFTHHSSASNTFWQAVQRGFE 53          
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Match: A0A640VJ57_9RHOB (ABC transporter substrate-binding protein n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A640VJ57_9RHOB)

HSP 1 Score: 52.4 bits (124), Expect = 1.330e-6
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 1
Query:   70 LDIVFTHHSSASNTFWQAVKKGFD 141
            ++IVFTHHSSASNTFWQAVKKGFD
Sbjct:   24 MNIVFTHHSSASNTFWQAVKKGFD 47          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96807.21314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A017HLM1_9RHOB3.280e-972.34Sugar ABC transporter, periplasmic sugar-binding p... [more]
A0A3N2R680_9RHOB3.760e-771.43Sugar ABC transporter substrate-binding protein n=... [more]
UPI00191B38C45.170e-774.36sugar ABC transporter substrate-binding protein n=... [more]
F7Y4J7_MESOW7.080e-795.83Peripla_BP_4 domain-containing protein n=107 Tax=P... [more]
A0A833GBB2_9HYPH7.090e-766.67Sugar ABC transporter substrate-binding protein n=... [more]
A0A395L0F5_9HYPH7.090e-795.83Peripla_BP_4 domain-containing protein n=8 Tax=Pro... [more]
UPI001783190A7.090e-795.83sugar ABC transporter substrate-binding protein n=... [more]
UPI0011EACCC57.090e-766.67sugar ABC transporter substrate-binding protein n=... [more]
UPI00141282277.110e-761.54sugar ABC transporter substrate-binding protein n=... [more]
A0A640VJ57_9RHOB1.330e-691.67ABC transporter substrate-binding protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96807contigEcto-sp13_S_contig96807:3..143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size141
Hectar predicted targeting categorysignal peptide
Exons1
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464231.703133-CDS-Ecto-sp13_S_contig96807:2..1371681464231.703133-CDS-Ecto-sp13_S_contig96807:2..137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig96807 3..137 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464231.7154012-UTR-Ecto-sp13_S_contig96807:137..1431681464231.7154012-UTR-Ecto-sp13_S_contig96807:137..143Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig96807 138..143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96807.21314.1prot_Ecto-sp13_S_contig96807.21314.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig96807 3..137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig96807.21314.1

>prot_Ecto-sp13_S_contig96807.21314.1 ID=prot_Ecto-sp13_S_contig96807.21314.1|Name=mRNA_Ecto-sp13_S_contig96807.21314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
MKLKLLAAAAMLASVSTPALALDIVFTHHSSASNTFWQAVKKGFD
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mRNA from alignment at Ecto-sp13_S_contig96807:3..143-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig96807.21314.1 ID=mRNA_Ecto-sp13_S_contig96807.21314.1|Name=mRNA_Ecto-sp13_S_contig96807.21314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96807:3..143- (Ectocarpus species13 EcNAP12_S_4_19m)
AAAACCATGAAACTCAAACTACTTGCTGCTGCGGCCATGCTCGCATCCGT TTCCACACCCGCTTTGGCGCTGGATATCGTTTTCACCCACCACTCTTCGG CCTCCAACACGTTTTGGCAGGCTGTGAAAAAGGGCTTTGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig96807:3..143-

>mRNA_Ecto-sp13_S_contig96807.21314.1 ID=mRNA_Ecto-sp13_S_contig96807.21314.1|Name=mRNA_Ecto-sp13_S_contig96807.21314.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96807:3..143- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACTCAAACTACTTGCTGCTGCGGCCATGCTCGCATCCGTTTCCAC
ACCCGCTTTGGCGCTGGATATCGTTTTCACCCACCACTCTTCGGCCTCCA
ACACGTTTTGGCAGGCTGTGAAAAAGGGCTTTGAT
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