prot_Ecto-sp13_S_contig96697.21301.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig96697.21301.1
Unique Nameprot_Ecto-sp13_S_contig96697.21301.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length64
Homology
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BLAST of mRNA_Ecto-sp13_S_contig96697.21301.1 vs. uniprot
Match: D7FY39_ECTSI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY39_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 4.810e-12
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0 
Query:   31 METPRDEVQKACVLGSGAFGTALAQLMARKGVPT 64
            METPRDE QKACVLGSGAFGTALAQLMARKGVPT
Sbjct:    1 METPRDEAQKACVLGSGAFGTALAQLMARKGVPT 34
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96697.21301.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY39_ECTSI4.810e-1297.06Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.720coord: 26..64
e-value: 1.6E-6
score: 29.6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..37
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 59..64
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..58
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..15
score: 0.726

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96697contigEcto-sp13_S_contig96697:333..524 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96697.21301.1mRNA_Ecto-sp13_S_contig96697.21301.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig96697 207..524 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig96697.21301.1 ID=prot_Ecto-sp13_S_contig96697.21301.1|Name=mRNA_Ecto-sp13_S_contig96697.21301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MLFAVCCLLFTVSCCRCPLSATLLLGLSLAMETPRDEVQKACVLGSGAFG
TALAQLMARKGVPT
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