mRNA_Ecto-sp13_S_contig96697.21301.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig96697.21301.1
Unique NamemRNA_Ecto-sp13_S_contig96697.21301.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig96697.21301.1 vs. uniprot
Match: D7FY39_ECTSI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY39_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.370e-11
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:  217 METPRDEVQKACVLGSGAFGTALAQLMARKGVPT 318
            METPRDE QKACVLGSGAFGTALAQLMARKGVPT
Sbjct:    1 METPRDEAQKACVLGSGAFGTALAQLMARKGVPT 34
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96697.21301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY39_ECTSI2.370e-1197.06Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96697contigEcto-sp13_S_contig96697:207..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size319
Hectar predicted targeting categorysignal peptide
Exons1
Cds size192
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464230.865608-UTR-Ecto-sp13_S_contig96697:206..3321681464230.865608-UTR-Ecto-sp13_S_contig96697:206..332Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig96697 207..332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464230.8763585-CDS-Ecto-sp13_S_contig96697:332..5241681464230.8763585-CDS-Ecto-sp13_S_contig96697:332..524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig96697 333..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96697.21301.1prot_Ecto-sp13_S_contig96697.21301.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig96697 333..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig96697.21301.1

>prot_Ecto-sp13_S_contig96697.21301.1 ID=prot_Ecto-sp13_S_contig96697.21301.1|Name=mRNA_Ecto-sp13_S_contig96697.21301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
MLFAVCCLLFTVSCCRCPLSATLLLGLSLAMETPRDEVQKACVLGSGAFG
TALAQLMARKGVPT
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mRNA from alignment at Ecto-sp13_S_contig96697:207..524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig96697.21301.1 ID=mRNA_Ecto-sp13_S_contig96697.21301.1|Name=mRNA_Ecto-sp13_S_contig96697.21301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96697:207..524+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAGATTTCACAAACAGCTCTGTAACTCTCCCAGTACCCTACAGAAGTA
TCAGTACCCTACAGAACGGACCTGTGCAAACTTCCATTGAAAGTGCTTCC
TTCTCAGATGATACACGGCGCCCCCGATGCTGTTTGCTGTTTGCTGTTTG
CTGTTTACCGTAAGTTGTTGCCGTTGTCCGCTCAGTGCCACTCTGCTGCT
TGGCTTGTCACTGGCAATGGAGACTCCACGCGATGAGGTTCAAAAGGCAT
GTGTGCTGGGGTCGGGAGCGTTCGGGACAGCCCTGGCACAGTTAATGGCA
AGAAAGGGGGTGCCGACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig96697:207..524+

>mRNA_Ecto-sp13_S_contig96697.21301.1 ID=mRNA_Ecto-sp13_S_contig96697.21301.1|Name=mRNA_Ecto-sp13_S_contig96697.21301.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96697:207..524+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTTTGCTGTTTGCTGTTTGCTGTTTACCGTAAGTTGTTGCCGTTG
TCCGCTCAGTGCCACTCTGCTGCTTGGCTTGTCACTGGCAATGGAGACTC
CACGCGATGAGGTTCAAAAGGCATGTGTGCTGGGGTCGGGAGCGTTCGGG
ACAGCCCTGGCACAGTTAATGGCAAGAAAGGGGGTGCCGACA
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