prot_Ecto-sp13_S_contig9459.21070.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9459.21070.1
Unique Nameprot_Ecto-sp13_S_contig9459.21070.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length274
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9459.21070.1 vs. uniprot
Match: D8LKX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX3_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 2.070e-124
Identity = 182/189 (96.30%), Postives = 187/189 (98.94%), Query Frame = 0 
Query:   45 MHLNRIGLEGEGKLLGSIALVLGSMMAIGALCGAAGTMFSADEGGRLPLLGAVYLSAPLSLADLVAGITFIVKRSEVLPLDLEHEQSRGGRPHPGPPSPVPGGNDPESQADSFRRLYDAFLCMALAFSVLEALMFRLGSRRIAANAERHRRAQGFGGSLVYGSGLESLLDEEDVRRNGWEDWRGETVQQ 233
            MHLNRIGLEGEGKLLGSIALVLGSMMAIGALCGAAGTMFSADEGGRLPLLGAVYLSAPLSLADL+AG+TFIVKRSEVL LDLEHEQSRGGRPHPGPPSPVPGG+DPESQADSFRRLYDAFLCMALAFSVLEALMFRLGSRRIAANAERHRRAQGFG SLVYGSG+ESLLDEEDVRRNGWEDWRG+TVQQ
Sbjct:    1 MHLNRIGLEGEGKLLGSIALVLGSMMAIGALCGAAGTMFSADEGGRLPLLGAVYLSAPLSLADLIAGVTFIVKRSEVLRLDLEHEQSRGGRPHPGPPSPVPGGDDPESQADSFRRLYDAFLCMALAFSVLEALMFRLGSRRIAANAERHRRAQGFGESLVYGSGMESLLDEEDVRRNGWEDWRGDTVQQ 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9459.21070.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKX3_ECTSI2.070e-12496.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..116
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 180..273
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 117..159
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 160..179
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..79
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 47..57
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 80..90
NoneNo IPR availableTMHMMTMhelixcoord: 93..115
NoneNo IPR availableTMHMMTMhelixcoord: 21..43
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
NoneNo IPR availableTMHMMTMhelixcoord: 160..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9459contigEcto-sp13_S_contig9459:459..3177 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9459.21070.1mRNA_Ecto-sp13_S_contig9459.21070.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9459 325..3242 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9459.21070.1 ID=prot_Ecto-sp13_S_contig9459.21070.1|Name=mRNA_Ecto-sp13_S_contig9459.21070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp
MRHRFGSRVRVRRDRHPPSPTYLPLTICRGLAGIAFLCFGELFWMHLNRI
GLEGEGKLLGSIALVLGSMMAIGALCGAAGTMFSADEGGRLPLLGAVYLS
APLSLADLVAGITFIVKRSEVLPLDLEHEQSRGGRPHPGPPSPVPGGNDP
ESQADSFRRLYDAFLCMALAFSVLEALMFRLGSRRIAANAERHRRAQGFG
GSLVYGSGLESLLDEEDVRRNGWEDWRGETVQQVCVKLLRVCCVGFLESI
IDRTKEMTNKGRAKYSAPQGRHR*
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