mRNA_Ecto-sp13_S_contig9459.21070.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9459.21070.1
Unique NamemRNA_Ecto-sp13_S_contig9459.21070.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9459.21070.1 vs. uniprot
Match: D8LKX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX3_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 2.400e-123
Identity = 182/189 (96.30%), Postives = 187/189 (98.94%), Query Frame = 3 
Query:  198 MHLNRIGLEGEGKLLGSIALVLGSMMAIGALCGAAGTMFSADEGGRLPLLGAVYLSAPLSLADLVAGITFIVKRSEVLPLDLEHEQSRGGRPHPGPPSPVPGGNDPESQADSFRRLYDAFLCMALAFSVLEALMFRLGSRRIAANAERHRRAQGFGGSLVYGSGLESLLDEEDVRRNGWEDWRGETVQQ 764
            MHLNRIGLEGEGKLLGSIALVLGSMMAIGALCGAAGTMFSADEGGRLPLLGAVYLSAPLSLADL+AG+TFIVKRSEVL LDLEHEQSRGGRPHPGPPSPVPGG+DPESQADSFRRLYDAFLCMALAFSVLEALMFRLGSRRIAANAERHRRAQGFG SLVYGSG+ESLLDEEDVRRNGWEDWRG+TVQQ
Sbjct:    1 MHLNRIGLEGEGKLLGSIALVLGSMMAIGALCGAAGTMFSADEGGRLPLLGAVYLSAPLSLADLIAGVTFIVKRSEVLRLDLEHEQSRGGRPHPGPPSPVPGGDDPESQADSFRRLYDAFLCMALAFSVLEALMFRLGSRRIAANAERHRRAQGFGESLVYGSGMESLLDEEDVRRNGWEDWRGDTVQQ 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9459.21070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKX3_ECTSI2.400e-12396.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9459contigEcto-sp13_S_contig9459:325..3242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1021
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_005900.1
Cds size822
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464213.7497122-UTR-Ecto-sp13_S_contig9459:324..4581681464213.7497122-UTR-Ecto-sp13_S_contig9459:324..458Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9459 325..458 -
1681464213.7980137-UTR-Ecto-sp13_S_contig9459:3177..32421681464213.7980137-UTR-Ecto-sp13_S_contig9459:3177..3242Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9459 3178..3242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464213.76145-CDS-Ecto-sp13_S_contig9459:458..9201681464213.76145-CDS-Ecto-sp13_S_contig9459:458..920Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9459 459..920 -
1681464213.7723436-CDS-Ecto-sp13_S_contig9459:1754..18681681464213.7723436-CDS-Ecto-sp13_S_contig9459:1754..1868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9459 1755..1868 -
1681464213.783193-CDS-Ecto-sp13_S_contig9459:2931..31771681464213.783193-CDS-Ecto-sp13_S_contig9459:2931..3177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9459 2932..3177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9459.21070.1prot_Ecto-sp13_S_contig9459.21070.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9459 459..3177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9459.21070.1

>prot_Ecto-sp13_S_contig9459.21070.1 ID=prot_Ecto-sp13_S_contig9459.21070.1|Name=mRNA_Ecto-sp13_S_contig9459.21070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp
MRHRFGSRVRVRRDRHPPSPTYLPLTICRGLAGIAFLCFGELFWMHLNRI
GLEGEGKLLGSIALVLGSMMAIGALCGAAGTMFSADEGGRLPLLGAVYLS
APLSLADLVAGITFIVKRSEVLPLDLEHEQSRGGRPHPGPPSPVPGGNDP
ESQADSFRRLYDAFLCMALAFSVLEALMFRLGSRRIAANAERHRRAQGFG
GSLVYGSGLESLLDEEDVRRNGWEDWRGETVQQVCVKLLRVCCVGFLESI
IDRTKEMTNKGRAKYSAPQGRHR*
back to top

mRNA from alignment at Ecto-sp13_S_contig9459:325..3242-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9459.21070.1 ID=mRNA_Ecto-sp13_S_contig9459.21070.1|Name=mRNA_Ecto-sp13_S_contig9459.21070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9459:325..3242- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGATCTGCTCTGTGTGCTAGAAAAGCCGGCGAAAATCTCACTTGCAACA
GCGTAGAAGACCATCATGCGGCATCGTTTCGGGTCACGGGTGCGAGTTCG
CCGCGACCGTCACCCTCCCAGTCCAACCTACCTCCCGCTGACTATATGCA
GAGGCTTGGCGGGAATAGCCTTCCTGTGCTTTGGAGAGCTCTTCTGGATG
CATCTCAACAGAATCGGGCTGGAGGGAGAGGGGAAGCTGCTGGGCTCGAT
TGCGCTTGTGTTGGGCTCGATGATGGCGATCGGCGCGCTATGCGGAGCTG
CAGGCACCATGGTAAGGGTCCGTGTATACTGCACCCTCGAATGGCTTGCT
CGGCAGTTACACCGCTTCAACATGTAGACGCGCCAGACCTATAAGGTGGT
GTTATGTGTTAACAGCACACATCCGTGACTGGGTTTGTTGTTTGTGACTC
GTGGCCTACCGAACACTCCGTTGCGGAGACACTGCTGTTAGTAACCGCTC
TTCACTTCGTTGGACCAGGGGACACGGCACGGCCGTAAAGCGGAGGAATT
CGTTCCCATGGAAGAATAGGATCAGAGATACGTGGGATAAGGATAGAAGG
GAAGCGAAGGGCTTCCGTGTTTTTGTTCTTGATGAACAACAGTATCGTCG
ACAGTCTACCACAGCAGTGACGCGAATCACTGTAGTTACGCCGTTACATG
CACTCCCCCGGTTCGCTGATTTTGTTTTCGTGCCCGCCCGGCCGCCAGGG
CTACATACAGGCTACAGGTGGTAGAAGTAGCGAAAACAATCAATGCCGTC
AACAATCGAAGGCGTCCATCTCCTACATAGAGGAAGGACAACTTCCCCCC
CTCCGCAAAAGTTCGGTCCAGACCTTGGTCACGAATCTATCGCCCTTCAA
CCTTGTGAAGGAGAACAACCATAATAAGGAAAAACCATCCACATGAAGTT
TAACACTTGTCTCGCAGCCGAATAGGATTCCACCCGAGATTTTTGAGGTG
CAGTCACGATTACGAAAATTTGTCGCAGTTTCTCTTGATGATTTGTGGAC
CGCAACAACTGCAGTAGACAAATCAACGCCTGTACCTACAGGAGAGGGAG
CACATGGGAGGCCCGGCTTCATCATTGTTTTGAGGACCGAAATAGATAAA
AAGAAGTTTGATCTGTTTTCAGGGATGCGTAACCCAGGGGTACCGAACAC
CGGATCTGGCTACTCCAGTTTGTACCATGGTGGGCATTGAACAAACGTTC
TGTCTGCCATGCACAAAAATATTTCAAAAATTCGACCCATCTACAAAAGG
ACCGCCTTCCCCATCCCTACATACCCCCCTAATCAGATCTCGTTTTCTTG
CCCTTGGGCTGCGTTGTTGTCCAGTTTTCGGCGGATGAAGGAGGTCGGTT
ACCCCTCCTGGGTGCGGTGTATCTCTCAGCTCCCCTCTCGTTGGCAGACC
TTGTTGCGGGCATCACCTTCATCGTCAAGCGGTCAGAGGTGAGCACCAAC
GCCACTAAATAGCCAGGGCTAGAATTGACGGCGTGGTGTTCGAGTTGGAG
AGGCAGGGTATGAGAAAACGCAGGCACACGCACACACACACATCTGGTAA
CACCCGCGGTTGGAGTCGCTTGCAGGTCAGTTTTGTAACCTCTTGCGCGA
TGTCTCCACAAGGTCAGGGCGACTCGTGCACCTCAGCTTCTGACGCCGAC
GGGTGTGCCGGGGTCGTCAGGTTAACCAGAGCAATAGTCGGCGGTAGTTG
TGGGGTACCATCGACGGACTGAAACGCGGCCTAACTAGGGCTGGAAGATG
GGCGGCTTCACCGGGACACCAAAAACCACGCCTTTGACCAGGTTTATCCT
GCGTTCCGTATTATTTCGTTCCAGGAGACACAAACGCTCGTGGCGAGACA
GAAAAAAAACGCTTAGTTTACTGAAGGGCATTCGCACCCGCCTTCCCAAT
GCTGCACCCACCCTCTACCCTATCCCGACCTGTCAACCGTTTGCGCCTTT
CCTCCTAACACTGCACCCCCCCTACCCTCCTATCAACCGATTCGTCCCTT
CCTAACACTGCACCCACCCTCTACCCCAAACCGACCTGTGAAGTGATCGC
TCCCTCCCTTACGCTGCACCCACCCTTCACCCTACCCAATCTGTCAACCG
ATTCCTCCCTTCCAACACCGCACCTAGTCTCAACCTGTCAACCGTTTGCG
CCCTTCCCACCACCTCACTCACCCACCCCAACCCGACCTTTCAACCGATT
TCTCCGCACTGCACCCCCCCCCCACTCGAAACCGACCTGTCGACCGATTT
TCTCTCACAAAAACGTCAACAGGTGCTGCCCCTCGACCTCGAACACGAAC
AATCCCGCGGAGGCCGACCGCACCCGGGGCCGCCAAGCCCTGTCCCTGGT
GGCAACGACCCGGAGTCCCAAGCCGACTCCTTCCGACGACTGTACGACGC
CTTCCTATGCATGGCCCTGGCCTTTTCTGTACTCGAGGCGCTCATGTTCA
GGCTCGGCAGCAGGCGTATCGCGGCCAACGCGGAGCGGCATCGACGGGCC
CAGGGGTTCGGCGGGAGCTTGGTGTACGGGAGCGGGCTGGAGTCGTTGCT
GGACGAGGAGGACGTGAGGCGCAACGGGTGGGAGGACTGGAGGGGGGAGA
CCGTGCAGCAGGTGTGCGTGAAGTTGCTGCGGGTTTGTTGTGTGGGGTTT
CTAGAAAGCATCATCGACCGCACTAAGGAGATGACCAATAAAGGCCGGGC
GAAATACTCCGCCCCCCAAGGTCGGCACCGGTAGATTTCTGTCGTGCGGG
GTCGAGAACCCTCACTCCGCGCAAGGGGGGATAATCGCACCACGTTGTGT
TAAAATTGGTCAAGCACCCTCGAGGCAGTTACACAATGCTAACAACTGTC
TCTGGATGTGAAAGCAAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9459:325..3242-

>mRNA_Ecto-sp13_S_contig9459.21070.1 ID=mRNA_Ecto-sp13_S_contig9459.21070.1|Name=mRNA_Ecto-sp13_S_contig9459.21070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9459:325..3242- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCATCGTTTCGGGTCACGGGTGCGAGTTCGCCGCGACCGTCACCC
TCCCAGTCCAACCTACCTCCCGCTGACTATATGCAGAGGCTTGGCGGGAA
TAGCCTTCCTGTGCTTTGGAGAGCTCTTCTGGATGCATCTCAACAGAATC
GGGCTGGAGGGAGAGGGGAAGCTGCTGGGCTCGATTGCGCTTGTGTTGGG
CTCGATGATGGCGATCGGCGCGCTATGCGGAGCTGCAGGCACCATGTTTT
CGGCGGATGAAGGAGGTCGGTTACCCCTCCTGGGTGCGGTGTATCTCTCA
GCTCCCCTCTCGTTGGCAGACCTTGTTGCGGGCATCACCTTCATCGTCAA
GCGGTCAGAGGTGCTGCCCCTCGACCTCGAACACGAACAATCCCGCGGAG
GCCGACCGCACCCGGGGCCGCCAAGCCCTGTCCCTGGTGGCAACGACCCG
GAGTCCCAAGCCGACTCCTTCCGACGACTGTACGACGCCTTCCTATGCAT
GGCCCTGGCCTTTTCTGTACTCGAGGCGCTCATGTTCAGGCTCGGCAGCA
GGCGTATCGCGGCCAACGCGGAGCGGCATCGACGGGCCCAGGGGTTCGGC
GGGAGCTTGGTGTACGGGAGCGGGCTGGAGTCGTTGCTGGACGAGGAGGA
CGTGAGGCGCAACGGGTGGGAGGACTGGAGGGGGGAGACCGTGCAGCAGG
TGTGCGTGAAGTTGCTGCGGGTTTGTTGTGTGGGGTTTCTAGAAAGCATC
ATCGACCGCACTAAGGAGATGACCAATAAAGGCCGGGCGAAATACTCCGC
CCCCCAAGGTCGGCACCGGTAG
back to top