prot_Ecto-sp13_S_contig9426.21024.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9426.21024.1
Unique Nameprot_Ecto-sp13_S_contig9426.21024.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length115
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9426.21024.1 vs. uniprot
Match: D8LKD1_ECTSI (Aardvark n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD1_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.610e-6
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0 
Query:   89 RGEQALEWLSSKNRVGTTLSMKKLTG 114
            RGEQALEWLSSKNRVGTTLSMKKLTG
Sbjct:  345 RGEQALEWLSSKNRVGTTLSMKKLTG 370
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9426.21024.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKD1_ECTSI1.610e-6100.00Aardvark n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..106
e-value: 1.8E-10
score: 42.2
IPR040104Armadillo repeat-containing protein 6PANTHERPTHR22895:SF0ARMADILLO REPEAT-CONTAINING PROTEIN 6coord: 1..57
IPR040104Armadillo repeat-containing protein 6PANTHERPTHR22895:SF0ARMADILLO REPEAT-CONTAINING PROTEIN 6coord: 43..102
NoneNo IPR availablePANTHERPTHR22895UNCHARACTERIZEDcoord: 43..102
NoneNo IPR availablePANTHERPTHR22895UNCHARACTERIZEDcoord: 1..57
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 3..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9426contigEcto-sp13_S_contig9426:5442..6340 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9426.21024.1mRNA_Ecto-sp13_S_contig9426.21024.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9426 5442..6340 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9426.21024.1 ID=prot_Ecto-sp13_S_contig9426.21024.1|Name=mRNA_Ecto-sp13_S_contig9426.21024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MGCGAVGNLANSNAQNCTRLGEAGGCLLVAGAMNAFPSDRNLQHVGCAAV
ANLAINNDPNASRLVKAGGRVAVERALDIFSDDAEIQTRGEQALEWLSSK
NRVGTTLSMKKLTG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR040104ARMC6
IPR016024ARM-type_fold