mRNA_Ecto-sp13_S_contig9426.21024.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9426.21024.1
Unique NamemRNA_Ecto-sp13_S_contig9426.21024.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9426.21024.1 vs. uniprot
Match: D8LKD1_ECTSI (Aardvark n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD1_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.610e-6
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:  265 RGEQALEWLSSKNRVGTTLSMKKLTG 342
            RGEQALEWLSSKNRVGTTLSMKKLTG
Sbjct:  345 RGEQALEWLSSKNRVGTTLSMKKLTG 370
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9426.21024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKD1_ECTSI1.610e-6100.00Aardvark n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9426contigEcto-sp13_S_contig9426:5442..6340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size345
Hectar predicted targeting categoryother localisation
Exons3
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464210.0353196-CDS-Ecto-sp13_S_contig9426:5441..54861681464210.0353196-CDS-Ecto-sp13_S_contig9426:5441..5486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9426 5442..5486 +
1681464210.048412-CDS-Ecto-sp13_S_contig9426:5797..59981681464210.048412-CDS-Ecto-sp13_S_contig9426:5797..5998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9426 5798..5998 +
1681464210.0611565-CDS-Ecto-sp13_S_contig9426:6241..63401681464210.0611565-CDS-Ecto-sp13_S_contig9426:6241..6340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9426 6242..6340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9426.21024.1prot_Ecto-sp13_S_contig9426.21024.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9426 5442..6340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9426.21024.1

>prot_Ecto-sp13_S_contig9426.21024.1 ID=prot_Ecto-sp13_S_contig9426.21024.1|Name=mRNA_Ecto-sp13_S_contig9426.21024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MGCGAVGNLANSNAQNCTRLGEAGGCLLVAGAMNAFPSDRNLQHVGCAAV
ANLAINNDPNASRLVKAGGRVAVERALDIFSDDAEIQTRGEQALEWLSSK
NRVGTTLSMKKLTG*
back to top

mRNA from alignment at Ecto-sp13_S_contig9426:5442..6340+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9426.21024.1 ID=mRNA_Ecto-sp13_S_contig9426.21024.1|Name=mRNA_Ecto-sp13_S_contig9426.21024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=899bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9426:5442..6340+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGTGCGGTGCGGTGGGAAACCTGGCAAATAGCAACGCGCAGGTGAG
AAAAGAAAAAATATAACAAGAAAAGCCAAGTTTGCAGGAGGTCTGCACCG
CAGAGGAAATCCTGTCTGTATGGCTGACCCTAAAATCAGAGCTCTTCATC
TGTCCGAAACTAAAAATTCAATAAAATAGTGCAATGGGAGCAAGTAAAAC
GTAAGAGACACGTGCGTTATTTGAGTTTTTTGGTCAGAAGAGTATTTGGA
AACATAAAAATCATCAATGTGGGCGCGCTCAACAAGCACGTGTTGACAAG
CCAACGGTCCAGGAACTAAGGCATGCGAAACCTGAATACCCCCCCTTATG
CGGCAGAACTGCACGCGGCTGGGGGAGGCGGGAGGCTGCCTGCTGGTGGC
CGGGGCTATGAATGCCTTTCCCAGCGATAGAAATCTGCAGCACGTGGGTT
GCGCCGCAGTCGCGAACCTGGCGATCAACAACGACCCGAACGCGAGCAGG
CTGGTAAAAGCCGGGGGGCGCGTGGCGGTGGAGCGCGCTTTGGACATATT
CTCGGACGTAAGCGGTGATGACTGCACACACGTAGTCTATTTCTTCTTGT
CTCCATCTTGTTCTTTGTTTTTGATTTGTGTTTTTTGTGTCTTTCTTTCT
TCCGATCCCGCCCTGATGCTCGTGTGTCGTGTGTTGTGTTCACAGAAAGC
CTGTACTGCACGTGGATTCTTTTGTCGATGCAACATTGGTGTTCTTCTTT
CTGTCACCAGCTGTTTTTCAACCCTGTGACGACATAACTTTTGCTTGCAG
GATGCGGAGATTCAGACGCGGGGAGAGCAGGCCTTGGAGTGGCTCAGTTC
CAAGAATCGCGTGGGCACTACGCTGTCCATGAAGAAGCTCACGGGGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9426:5442..6340+

>mRNA_Ecto-sp13_S_contig9426.21024.1 ID=mRNA_Ecto-sp13_S_contig9426.21024.1|Name=mRNA_Ecto-sp13_S_contig9426.21024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9426:5442..6340+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGTGCGGTGCGGTGGGAAACCTGGCAAATAGCAACGCGCAGAACTG
CACGCGGCTGGGGGAGGCGGGAGGCTGCCTGCTGGTGGCCGGGGCTATGA
ATGCCTTTCCCAGCGATAGAAATCTGCAGCACGTGGGTTGCGCCGCAGTC
GCGAACCTGGCGATCAACAACGACCCGAACGCGAGCAGGCTGGTAAAAGC
CGGGGGGCGCGTGGCGGTGGAGCGCGCTTTGGACATATTCTCGGACGATG
CGGAGATTCAGACGCGGGGAGAGCAGGCCTTGGAGTGGCTCAGTTCCAAG
AATCGCGTGGGCACTACGCTGTCCATGAAGAAGCTCACGGGGTAA
back to top