prot_Ecto-sp13_S_contig9317.20912.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9317.20912.1
Unique Nameprot_Ecto-sp13_S_contig9317.20912.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length788
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9317.20912.1 vs. uniprot
Match: D8LB00_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB00_ECTSI)

HSP 1 Score: 470 bits (1210), Expect = 3.020e-151
Identity = 763/786 (97.07%), Postives = 768/786 (97.71%), Query Frame = 0 
Query:    1 MTFRRAAAVTAKGLAQASRSRFANPPPVAATAPPATDLLATGANTSARISTXXXXXXXXXXXXXHSAAAPADAEPPHSSNVWETPISNDSAGGLNGDGXXXXXXXXXXXXXXXXXXXXXXFGGMRRRFDFETGAKNLRAXXXXXXXXXSPPLHPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAERVLRQALECPGVVDTVLCNAALNTFASDGRWQVVLEVMRQMREAGLTPDARTYTNAIKACGKGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGLPIKAQSYTVAIKACGDAGAGKPAVALLREMQAELSVPPNVXXXXXXXXXXXXXXXXXXXXXXXXXMTSMGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAPAAGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIXXXXXXXXXXXXXXGERGRDEADRVLADMSSGLWEGNDDGGGDASP 786
            MTFRRAAAVTAKGLAQASR RFANPPPVAATAPP TDLLATGANTSARISTXXXXXXXXXXXXX     PA+A+PPH S+VWETPISNDSAGGLNGDGXXXXXXXXXXXXXXXXXXXXXXFGGMRRRFDFETGAKNLRAXXXXXXXXX    HPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAERVLRQALECPGVVDTV+CNA LNTFA+DGRWQVVLEVMRQMREAGLTPDA TYTNAIKACGKGR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGLPIKAQSYTVAIKACGDAG GKPAVALLREMQAELSVPPNVXXXXXXXXXXXXXXXXXXXXXXXXXM SMGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAPAAGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIXXXXXXXXXXXXXXGERGRDEADRVLADMSSGLWEGNDDGG DASP
Sbjct:    1 MTFRRAAAVTAKGLAQASRGRFANPPPVAATAPPVTDLLATGANTSARISTXXXXXXXXXXXXXXXXXXPAEAKPPHPSSVWETPISNDSAGGLNGDGXXXXXXXXXXXXXXXXXXXXXXFGGMRRRFDFETGAKNLRAXXXXXXXXXXXXXHPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAERVLRQALECPGVVDTVMCNAVLNTFAADGRWQVVLEVMRQMREAGLTPDALTYTNAIKACGKGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGLPIKAQSYTVAIKACGDAGEGKPAVALLREMQAELSVPPNVXXXXXXXXXXXXXXXXXXXXXXXXXMASMGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAPAAGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIXXXXXXXXXXXXXXGERGRDEADRVLADMSSGLWEGNDDGGVDASP 786
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9317.20912.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB00_ECTSI3.020e-15197.07PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 559..665
e-value: 3.1E-32
score: 114.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 181..297
e-value: 2.0E-22
score: 81.4
coord: 463..558
e-value: 9.1E-20
score: 72.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 298..452
e-value: 2.9E-37
score: 130.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 698..772
e-value: 1.9E-9
score: 39.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 320..354
e-value: 7.1E-5
score: 20.7
coord: 391..422
e-value: 2.1E-6
score: 25.5
coord: 567..600
e-value: 1.3E-6
score: 26.2
coord: 638..670
e-value: 1.9E-5
score: 22.5
coord: 603..635
e-value: 2.0E-6
score: 25.6
coord: 215..249
e-value: 5.8E-5
score: 21.0
coord: 251..283
e-value: 2.1E-5
score: 22.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 564..611
e-value: 9.7E-11
score: 41.7
coord: 213..260
e-value: 7.6E-8
score: 32.4
coord: 670..717
e-value: 1.5E-7
score: 31.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 638..667
e-value: 2.3E-4
score: 21.2
coord: 496..525
e-value: 0.0082
score: 16.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 271..330
e-value: 4.7E-8
score: 33.0
coord: 411..471
e-value: 6.6E-8
score: 32.5
coord: 341..400
e-value: 0.0088
score: 16.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 494..528
score: 8.758
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 353..387
score: 6.675
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 635..669
score: 10.731
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 529..563
score: 7.333
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 213..247
score: 10.589
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 600..634
score: 11.794
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 670..705
score: 8.78
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 283..317
score: 8.912
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 458..488
score: 7.421
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 423..457
score: 8.221
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 248..282
score: 10.753
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 706..742
score: 10.556
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 565..599
score: 11.542
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 388..422
score: 11.126
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 318..352
score: 10.457
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 349..523
coord: 194..359
coord: 614..760
coord: 512..713

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9317contigEcto-sp13_S_contig9317:2315..4678 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9317.20912.1mRNA_Ecto-sp13_S_contig9317.20912.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9317 2315..4678 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9317.20912.1 ID=prot_Ecto-sp13_S_contig9317.20912.1|Name=mRNA_Ecto-sp13_S_contig9317.20912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=788bp
MTFRRAAAVTAKGLAQASRSRFANPPPVAATAPPATDLLATGANTSARIS
TSSSSRRSTWAAEQHSAAAPADAEPPHSSNVWETPISNDSAGGLNGDGGG
TQERKQKDRRKPPPPSRREAFGGMRRRFDFETGAKNLRAAAAAAAAATSP
PLHPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAER
VLRQALECPGVVDTVLCNAALNTFASDGRWQVVLEVMRQMREAGLTPDAR
TYTNAIKACGKGREWRRSVALLKEMSAHGVEPNSIHYVCAMTACKISGMG
AEAVGLLREMQAAGIEPNIICYNTAIAACGTGGQSEVAVDLLEEMNALGV
RPNAQTCLAAVRAAGDRDRGQQAVSVLRSMSEAGVAAEAKCYAIAIKACG
RGRRWARALELLREMEKNGVEPIVMGYDACIAACGDGKQWEQAVALLREM
PTVGVTPTVVSYSHAIAACGQSYQWKPALELLREMPQEAGINPDAVCYNN
CMTALGRGLQWEMALTLLREMPSVGLPIKAQSYTVAIKACGDAGAGKPAV
ALLREMQAELSVPPNVISYTAAIAACGKGDQWKQALELLREMTSMGVSPN
DRTYTAAITACGNSGKWEEALSLLREMPAMGADPNIASYTAAIKACGNGG
QWERAVELFRELPSAGITADVQAYNACVQACGNSRAVDQAVELLREMAPA
AGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIAPNAVTHESA
LAACGERGRDEADRVLADMSSGLWEGNDDGGGDASPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat