mRNA_Ecto-sp13_S_contig9317.20912.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig9317.20912.1
Unique Name	mRNA_Ecto-sp13_S_contig9317.20912.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9317.20912.1 vs. uniprot
Match: D8LB00_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB00_ECTSI)

HSP 1 Score: 470 bits (1210), Expect = 3.020e-151
Identity = 763/786 (97.07%), Postives = 768/786 (97.71%), Query Frame = 1

Query:    1 MTFRRAAAVTAKGLAQASRSRFANPPPVAATAPPATDLLATGANTSARISTXXXXXXXXXXXXXHSAAAPADAEPPHSSNVWETPISNDSAGGLNGDGXXXXXXXXXXXXXXXXXXXXXXFGGMRRRFDFETGAKNLRAXXXXXXXXXSPPLHPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAERVLRQALECPGVVDTVLCNAALNTFASDGRWQVVLEVMRQMREAGLTPDARTYTNAIKACGKGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGLPIKAQSYTVAIKACGDAGAGKPAVALLREMQAELSVPPNVXXXXXXXXXXXXXXXXXXXXXXXXXMTSMGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAPAAGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIXXXXXXXXXXXXXXGERGRDEADRVLADMSSGLWEGNDDGGGDASP 2358
            MTFRRAAAVTAKGLAQASR RFANPPPVAATAPP TDLLATGANTSARISTXXXXXXXXXXXXX     PA+A+PPH S+VWETPISNDSAGGLNGDGXXXXXXXXXXXXXXXXXXXXXXFGGMRRRFDFETGAKNLRAXXXXXXXXX    HPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAERVLRQALECPGVVDTV+CNA LNTFA+DGRWQVVLEVMRQMREAGLTPDA TYTNAIKACGKGR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGLPIKAQSYTVAIKACGDAG GKPAVALLREMQAELSVPPNVXXXXXXXXXXXXXXXXXXXXXXXXXM SMGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAPAAGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIXXXXXXXXXXXXXXGERGRDEADRVLADMSSGLWEGNDDGG DASP
Sbjct:    1 MTFRRAAAVTAKGLAQASRGRFANPPPVAATAPPVTDLLATGANTSARISTXXXXXXXXXXXXXXXXXXPAEAKPPHPSSVWETPISNDSAGGLNGDGXXXXXXXXXXXXXXXXXXXXXXFGGMRRRFDFETGAKNLRAXXXXXXXXXXXXXHPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAERVLRQALECPGVVDTVMCNAVLNTFAADGRWQVVLEVMRQMREAGLTPDALTYTNAIKACGKGREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVGLPIKAQSYTVAIKACGDAGEGKPAVALLREMQAELSVPPNVXXXXXXXXXXXXXXXXXXXXXXXXXMASMGVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAPAAGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIXXXXXXXXXXXXXXGERGRDEADRVLADMSSGLWEGNDDGGVDASP 786

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9317.20912.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9317.20912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LB00_ECTSI	3.020e-151	97.07	PPR_long domain-containing protein n=2 Tax=Ectocar...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig9317	contig	Ecto-sp13_S_contig9317:2315..4678 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	479.6
Seed ortholog evalue	2.9e-132
Seed eggNOG ortholog	2880.D8LB00
Model size	2364
Hectar predicted targeting category	mitochondrion
Exons	1
EggNOG free text desc.	endonuclease activity
EggNOG OGs	KOG4197@1,KOG4197@2759
Ec32 ortholog description	Pentatricopeptide repeat
Ec32 ortholog	Ec-27_005780.1
Cds size	2364
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464201.0158179-CDS-Ecto-sp13_S_contig9317:2314..4678	1681464201.0158179-CDS-Ecto-sp13_S_contig9317:2314..4678	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig9317 2315..4678 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig9317.20912.1	prot_Ecto-sp13_S_contig9317.20912.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig9317 2315..4678 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig9317:2315..4678-
coding sequence from alignment at Ecto-sp13_S_contig9317:2315..4678-

protein sequence of mRNA_Ecto-sp13_S_contig9317.20912.1

>prot_Ecto-sp13_S_contig9317.20912.1 ID=prot_Ecto-sp13_S_contig9317.20912.1|Name=mRNA_Ecto-sp13_S_contig9317.20912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=788bp
MTFRRAAAVTAKGLAQASRSRFANPPPVAATAPPATDLLATGANTSARIS
TSSSSRRSTWAAEQHSAAAPADAEPPHSSNVWETPISNDSAGGLNGDGGG
TQERKQKDRRKPPPPSRREAFGGMRRRFDFETGAKNLRAAAAAAAAATSP
PLHPWVAARLRRESMRAKKSRTPDFGRRRGPFMRRLQQAGMRRDCDEAER
VLRQALECPGVVDTVLCNAALNTFASDGRWQVVLEVMRQMREAGLTPDAR
TYTNAIKACGKGREWRRSVALLKEMSAHGVEPNSIHYVCAMTACKISGMG
AEAVGLLREMQAAGIEPNIICYNTAIAACGTGGQSEVAVDLLEEMNALGV
RPNAQTCLAAVRAAGDRDRGQQAVSVLRSMSEAGVAAEAKCYAIAIKACG
RGRRWARALELLREMEKNGVEPIVMGYDACIAACGDGKQWEQAVALLREM
PTVGVTPTVVSYSHAIAACGQSYQWKPALELLREMPQEAGINPDAVCYNN
CMTALGRGLQWEMALTLLREMPSVGLPIKAQSYTVAIKACGDAGAGKPAV
ALLREMQAELSVPPNVISYTAAIAACGKGDQWKQALELLREMTSMGVSPN
DRTYTAAITACGNSGKWEEALSLLREMPAMGADPNIASYTAAIKACGNGG
QWERAVELFRELPSAGITADVQAYNACVQACGNSRAVDQAVELLREMAPA
AGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIAPNAVTHESA
LAACGERGRDEADRVLADMSSGLWEGNDDGGGDASPL*

mRNA from alignment at Ecto-sp13_S_contig9317:2315..4678-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig9317.20912.1 ID=mRNA_Ecto-sp13_S_contig9317.20912.1|Name=mRNA_Ecto-sp13_S_contig9317.20912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2364bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9317:2315..4678- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTTCCGCCGCGCCGCCGCGGTGACGGCGAAAGGCCTCGCCCAGGC
CTCGCGGAGCCGCTTCGCCAACCCCCCCCCGGTTGCAGCAACGGCACCAC
CAGCCACAGACCTCCTTGCAACGGGCGCTAACACCTCAGCCAGAATATCC
ACATCTTCCAGCAGCAGAAGAAGCACCTGGGCCGCAGAGCAGCACTCCGC
GGCCGCGCCGGCAGACGCAGAACCGCCGCATTCTTCCAACGTTTGGGAAA
CCCCGATCTCCAATGATTCGGCAGGTGGTCTCAACGGCGACGGCGGCGGG
ACTCAGGAGCGAAAGCAAAAGGACAGACGAAAACCACCACCACCATCACG
ACGAGAGGCCTTCGGCGGCATGAGACGTCGCTTTGATTTCGAAACGGGCG
CGAAGAACTTGCGGGCGGCGGCTGCGGCGGCGGCAGCGGCAACGTCGCCG
CCCCTACACCCGTGGGTTGCCGCGCGCTTGCGGAGGGAGTCGATGCGAGC
CAAGAAGAGCAGGACGCCGGACTTCGGGCGCCGACGGGGCCCGTTCATGA
GGCGCCTGCAGCAGGCGGGAATGAGAAGGGATTGCGATGAGGCGGAGCGG
GTCCTGAGGCAAGCCCTCGAGTGTCCCGGGGTGGTAGACACCGTTCTGTG
TAACGCCGCGCTCAACACGTTCGCCTCCGACGGAAGGTGGCAGGTCGTGC
TGGAGGTGATGCGGCAGATGCGGGAGGCCGGTCTCACGCCGGACGCCCGC
ACCTACACAAACGCGATAAAGGCTTGCGGGAAGGGGAGGGAGTGGCGTCG
CTCCGTGGCGCTCCTGAAGGAGATGTCGGCCCACGGCGTCGAGCCCAACT
CCATTCACTACGTGTGCGCCATGACGGCCTGCAAGATCAGCGGCATGGGC
GCGGAGGCTGTGGGCCTCCTGCGCGAGATGCAGGCCGCCGGCATCGAGCC
GAACATCATCTGCTATAACACGGCAATCGCTGCTTGCGGCACGGGGGGGC
AGTCGGAGGTCGCTGTCGACCTCCTAGAGGAGATGAACGCCCTGGGGGTT
CGCCCGAACGCCCAGACGTGCCTCGCGGCTGTCCGGGCGGCCGGCGACAG
GGACAGGGGTCAGCAGGCGGTTTCTGTGCTCCGAAGTATGTCGGAGGCCG
GGGTTGCTGCAGAGGCCAAGTGCTACGCCATCGCCATCAAGGCCTGCGGC
CGGGGGCGGCGCTGGGCGCGGGCGTTGGAGCTTTTGAGGGAGATGGAGAA
GAACGGGGTCGAGCCGATCGTGATGGGCTACGACGCGTGCATCGCGGCCT
GCGGGGACGGCAAGCAGTGGGAGCAGGCGGTGGCGCTCCTGCGAGAGATG
CCGACGGTAGGGGTGACGCCGACGGTGGTCAGCTACAGCCACGCCATCGC
CGCTTGCGGGCAGTCGTACCAGTGGAAGCCCGCCCTGGAGCTGCTCCGCG
AAATGCCGCAGGAGGCGGGGATCAACCCAGACGCCGTCTGCTACAATAAC
TGCATGACAGCGCTGGGCCGGGGGCTGCAGTGGGAGATGGCCCTCACGCT
CCTGCGTGAAATGCCGTCGGTGGGGCTCCCGATCAAGGCGCAGAGCTACA
CCGTGGCCATCAAGGCTTGCGGCGACGCGGGCGCGGGAAAGCCAGCCGTC
GCGCTGCTGCGGGAGATGCAGGCGGAGCTGAGCGTCCCCCCGAACGTCAT
CTCTTACACGGCCGCCATCGCCGCCTGCGGGAAGGGGGACCAGTGGAAGC
AGGCGCTCGAGCTCCTACGAGAGATGACGTCGATGGGCGTCTCGCCGAAC
GACAGGACCTACACGGCGGCCATCACGGCCTGCGGCAACAGCGGCAAGTG
GGAGGAGGCGCTGTCGCTGCTGCGCGAGATGCCGGCCATGGGAGCGGACC
CGAACATCGCAAGCTACACCGCCGCTATTAAGGCCTGCGGCAACGGCGGC
CAGTGGGAGAGGGCCGTCGAGCTCTTCCGGGAGCTCCCGAGCGCCGGGAT
CACCGCCGACGTTCAGGCGTACAATGCCTGCGTCCAGGCGTGCGGGAACT
CCCGAGCGGTCGACCAGGCGGTGGAGCTCCTGCGGGAGATGGCACCGGCC
GCCGGCTTGGAGCCAAACGTCTTCACCTATAACGCGGCCCTGATGGCCTG
CTCCTGCCCGGACGGGGGACGGTGGGGGAAGGCGCTCGAGCTGCTGGAGG
AGATGGCGTGGAGGGGCATCGCGCCCAACGCGGTGACGCACGAGTCGGCA
CTTGCGGCGTGCGGCGAGAGGGGCAGGGACGAGGCGGACAGGGTTCTGGC
GGACATGTCGTCGGGGTTGTGGGAGGGCAATGACGACGGCGGCGGGGACG
CATCTCCCCTCTGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9317:2315..4678-

>mRNA_Ecto-sp13_S_contig9317.20912.1 ID=mRNA_Ecto-sp13_S_contig9317.20912.1|Name=mRNA_Ecto-sp13_S_contig9317.20912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2364bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9317:2315..4678- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCTTCCGCCGCGCCGCCGCGGTGACGGCGAAAGGCCTCGCCCAGGC
CTCGCGGAGCCGCTTCGCCAACCCCCCCCCGGTTGCAGCAACGGCACCAC
CAGCCACAGACCTCCTTGCAACGGGCGCTAACACCTCAGCCAGAATATCC
ACATCTTCCAGCAGCAGAAGAAGCACCTGGGCCGCAGAGCAGCACTCCGC
GGCCGCGCCGGCAGACGCAGAACCGCCGCATTCTTCCAACGTTTGGGAAA
CCCCGATCTCCAATGATTCGGCAGGTGGTCTCAACGGCGACGGCGGCGGG
ACTCAGGAGCGAAAGCAAAAGGACAGACGAAAACCACCACCACCATCACG
ACGAGAGGCCTTCGGCGGCATGAGACGTCGCTTTGATTTCGAAACGGGCG
CGAAGAACTTGCGGGCGGCGGCTGCGGCGGCGGCAGCGGCAACGTCGCCG
CCCCTACACCCGTGGGTTGCCGCGCGCTTGCGGAGGGAGTCGATGCGAGC
CAAGAAGAGCAGGACGCCGGACTTCGGGCGCCGACGGGGCCCGTTCATGA
GGCGCCTGCAGCAGGCGGGAATGAGAAGGGATTGCGATGAGGCGGAGCGG
GTCCTGAGGCAAGCCCTCGAGTGTCCCGGGGTGGTAGACACCGTTCTGTG
TAACGCCGCGCTCAACACGTTCGCCTCCGACGGAAGGTGGCAGGTCGTGC
TGGAGGTGATGCGGCAGATGCGGGAGGCCGGTCTCACGCCGGACGCCCGC
ACCTACACAAACGCGATAAAGGCTTGCGGGAAGGGGAGGGAGTGGCGTCG
CTCCGTGGCGCTCCTGAAGGAGATGTCGGCCCACGGCGTCGAGCCCAACT
CCATTCACTACGTGTGCGCCATGACGGCCTGCAAGATCAGCGGCATGGGC
GCGGAGGCTGTGGGCCTCCTGCGCGAGATGCAGGCCGCCGGCATCGAGCC
GAACATCATCTGCTATAACACGGCAATCGCTGCTTGCGGCACGGGGGGGC
AGTCGGAGGTCGCTGTCGACCTCCTAGAGGAGATGAACGCCCTGGGGGTT
CGCCCGAACGCCCAGACGTGCCTCGCGGCTGTCCGGGCGGCCGGCGACAG
GGACAGGGGTCAGCAGGCGGTTTCTGTGCTCCGAAGTATGTCGGAGGCCG
GGGTTGCTGCAGAGGCCAAGTGCTACGCCATCGCCATCAAGGCCTGCGGC
CGGGGGCGGCGCTGGGCGCGGGCGTTGGAGCTTTTGAGGGAGATGGAGAA
GAACGGGGTCGAGCCGATCGTGATGGGCTACGACGCGTGCATCGCGGCCT
GCGGGGACGGCAAGCAGTGGGAGCAGGCGGTGGCGCTCCTGCGAGAGATG
CCGACGGTAGGGGTGACGCCGACGGTGGTCAGCTACAGCCACGCCATCGC
CGCTTGCGGGCAGTCGTACCAGTGGAAGCCCGCCCTGGAGCTGCTCCGCG
AAATGCCGCAGGAGGCGGGGATCAACCCAGACGCCGTCTGCTACAATAAC
TGCATGACAGCGCTGGGCCGGGGGCTGCAGTGGGAGATGGCCCTCACGCT
CCTGCGTGAAATGCCGTCGGTGGGGCTCCCGATCAAGGCGCAGAGCTACA
CCGTGGCCATCAAGGCTTGCGGCGACGCGGGCGCGGGAAAGCCAGCCGTC
GCGCTGCTGCGGGAGATGCAGGCGGAGCTGAGCGTCCCCCCGAACGTCAT
CTCTTACACGGCCGCCATCGCCGCCTGCGGGAAGGGGGACCAGTGGAAGC
AGGCGCTCGAGCTCCTACGAGAGATGACGTCGATGGGCGTCTCGCCGAAC
GACAGGACCTACACGGCGGCCATCACGGCCTGCGGCAACAGCGGCAAGTG
GGAGGAGGCGCTGTCGCTGCTGCGCGAGATGCCGGCCATGGGAGCGGACC
CGAACATCGCAAGCTACACCGCCGCTATTAAGGCCTGCGGCAACGGCGGC
CAGTGGGAGAGGGCCGTCGAGCTCTTCCGGGAGCTCCCGAGCGCCGGGAT
CACCGCCGACGTTCAGGCGTACAATGCCTGCGTCCAGGCGTGCGGGAACT
CCCGAGCGGTCGACCAGGCGGTGGAGCTCCTGCGGGAGATGGCACCGGCC
GCCGGCTTGGAGCCAAACGTCTTCACCTATAACGCGGCCCTGATGGCCTG
CTCCTGCCCGGACGGGGGACGGTGGGGGAAGGCGCTCGAGCTGCTGGAGG
AGATGGCGTGGAGGGGCATCGCGCCCAACGCGGTGACGCACGAGTCGGCA
CTTGCGGCGTGCGGCGAGAGGGGCAGGGACGAGGCGGACAGGGTTCTGGC
GGACATGTCGTCGGGGTTGTGGGAGGGCAATGACGACGGCGGCGGGGACG
CATCTCCCCTCTGA