prot_Ecto-sp13_S_contig926.20847.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig926.20847.1
Unique Name	prot_Ecto-sp13_S_contig926.20847.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	791

Homology

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BLAST of mRNA_Ecto-sp13_S_contig926.20847.1 vs. uniprot
Match: D8LGM1_ECTSI (F-box domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM1_ECTSI)

HSP 1 Score: 877 bits (2267), Expect = 9.700e-310
Identity = 719/839 (85.70%), Postives = 727/839 (86.65%), Query Frame = 0

Query:    1 MSSRPRLVGGAALEEVEDDEEDNAYGQGGGQGAGRSVLEEMPPGEACFE--------------------------------------AFNVSEDVTAAILGDLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVPPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDPRHDIFRAVWPQLPSSLSSRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-SLSDGQSFFFGDGGVXXXXXXXXXXXXXXXXXVTLLGVEDNPKEQYAKQLTERKARLERQQRQEILREARKRADRRRRGYERGLDCLHVRVLPPVLGMSLALTLVFLAAWIDGDVQANVGLLESACSDVDLLRRGCGGGGDGCAGVEGARRPRVVRAVHLFWITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILTPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWCCVLSLILCGYACSYPPRHPDPQDGXXXXXXXXXXXXXXXXXS-------------FAPTPLRGFATRLPRPTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---PSTMSPLPGSLPHXXXXXXXXXXXXXXXXXXXXXXSLPRQLTPGPHASXXXXXXXXXXXXXGADMPPDMADIVALRSQLAELGVMAGFLDPSSPTVAAATGSIDARGIRSRNWVG 784
            MSSRPRLVGGAAL+EVEDDEEDN YGQGGGQGAGRSVLEEMPPGEACFE                                      AFNVSEDVTAAILGDLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AVDPRHDIFRAVWPQLPSSLSSRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXXXXXX  SL DG+SFF      XXXXXXXXXXXXXXXXXVTLLGVEDNPKEQYAKQLTERKARLE+QQR+EI REA++RADRRRRGYERGLDCLHVRVLPPVLGMSLALTLVFLAAWIDGDVQANVGLLESACSDVDLLRRGCGGG DG AGVEGARRP VVRA++LF ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLIL PVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWCCVLSLILCGYACSYPPRHPDPQDG XXXXXXXXXXXXXXXX              FAPTPLRGFATRLPRPTA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   PSTMSPLPGSLPHXXXXXX XXXXXXXXX      SLPRQLTPGPHAS             GADMPPDMADIVALRSQLAELGVMAGFLDP SPTVAAATGSID RGIRSRNW G
Sbjct:    1 MSSRPRLVGGAALDEVEDDEEDNVYGQGGGQGAGRSVLEEMPPGEACFEVKFWGGGQRFGNLVATMSCGSLVRCFFFHPFGSGGRKKAFNVSEDVTAAILGDLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AVDPRHDIFRAVWPQLPSSLSSRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAMLGYDGSAGXXXXXXXXXXXXSLGDGRSFFX----XXXXXXXXXXXXXXXXXXVTLLGVEDNPKEQYAKQLTERKARLEKQQRKEIQREAQERADRRRRGYERGLDCLHVRVLPPVLGMSLALTLVFLAAWIDGDVQANVGLLESACSDVDLLRRGCGGGRDGGAGVEGARRPWVVRAINLFRITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWCCVLSLILCGYACSYPPRHPDPQDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAPTPLRGFATRLPRPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTMSPLPGSLPHXXXXXXPXXXXXXXXXY-----SLPRQLTPGPHASGGNATARG-----GADMPPDMADIVALRSQLAELGVMAGFLDPPSPTVAAATGSIDGRGIRSRNWGG 824

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BLAST of mRNA_Ecto-sp13_S_contig926.20847.1 vs. uniprot
Match: A0A6H5L5A3_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 745 bits (1924), Expect = 5.010e-248
Identity = 659/865 (76.18%), Postives = 668/865 (77.23%), Query Frame = 0

Query:    1 MSSRPRLVGGAALEEVEDDEEDNAYGQGGGQGAGRSVLEEMPPGEACFEAFNVSEDVTAAILGDLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVPPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDPRHDIFRAVWPQLPSSLSSRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLSDGQSFFFGDGGVXXXXXXXXXXXXXXXXX---VTLLGVEDNPKEQYAKQLTERKARLERQQRQEILREARKRADRRRRGYERGLDCLHVRVLPPVLGMSLALTLVFLAAWIDGD------------VQANVGLLESACSDVDLLRRGCGGGGDGCA--GVEGARRPRVVRAVH--------------LFW------------ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILTPVAMAIAVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLTAAEVFTPLIVWCCVLSLILCGYACSYPPRHPDPQDGXXXXXXXXXXXXXXXXX--------SFAPTPLRGFATRLPRPTASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------PSTMSPLPGSLPHXXXXXXXXXXXXXXXXXXXXXXSLPRQLTPGPHASXXXXXXXXXXXXXGADMPPDMADIVALRSQLAELGVMAGFLDPSSPTVAAATGSIDARGIRSRNWVG 784
            MSSRPRLVGGAALEEVED EEDN YGQGGG+GAGRSVLEE+PPGEACFEAFNVSEDVTAAILGDLDA DLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVP   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        AVDPRHDIFRAVWPQLPSSLSSRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                XXXXXXXXXXXXXXXXX    T LGVEDNPKEQYAKQLTERKARLERQQR+EILREARKRADRRRRGYERGLD LHVRVLPPVLGMSLALTLVFLAAWIDGD            +   V     A +      R   G        G+ G  R  +   VH              LF             ITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLIL PV MAIAVAVRRMQRGEPVEA LVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTL+AAEVFTPLIVWCCVLSLILCGYACSYPPRHPDPQDG        XXXXXXXXX        SFAPTPLR FATRLPR TAS       XXXXXXXXXX  XXXXXXXXXXXXXXXXXX  XXX                              PSTMSPLPGSLPH    XXX               SLPR LTPGPHAS  XXXXXXXXXXX ADM PDMA+IVALRSQLAELGVMAGFLDPSSPTVAAATGSID RGIRSRNW G
Sbjct:  629 MSSRPRLVGGAALEEVEDVEEDNVYGQGGGRGAGRSVLEEIPPGEACFEAFNVSEDVTAAILGDLDAHDLARAAATSRGWRRCTSSRVLWAAVYARDFLGHVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA------AVDPRHDIFRAVWPQLPSSLSSRSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATHLGVEDNPKEQYAKQLTERKARLERQQREEILREARKRADRRRRGYERGLDYLHVRVLPPVLGMSLALTLVFLAAWIDGDTWDYWKVLAPMWISCAVAAAAVATAVWAWRERAAHGSSVRATYYGLRGMVRYFMAEVVHDSVIGIMSGIALLFLFTLELVVLGLRVEGITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLLGMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILAPVGMAIAVAVRRMQRGEPVEATLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGERDTLSAAEVFTPLIVWCCVLSLILCGYACSYPPRHPDPQDGGSGGGGIGXXXXXXXXXXXXDTTPSSFAPTPLRAFATRLPRHTASASVGGLGXXXXXXXXXXEVXXXXXXXXXXXXXXXXXXGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSTMSPLPGSLPHHRHPXXXHY-------------SLPRPLTPGPHASGGXXXXXXXXXXX-ADMHPDMAEIVALRSQLAELGVMAGFLDPSSPTVAAATGSIDGRGIRSRNWGG 1473

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig926.20847.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig926.20847.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LGM1_ECTSI	9.700e-310	85.70	F-box domain-containing protein (Fragment) n=1 Tax...	[more]
A0A6H5L5A3_9PHAE	5.010e-248	76.18	F-box domain-containing protein n=1 Tax=Ectocarpus...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 292..316
None	No IPR available	GENE3D	1.20.1280.50		coord: 50..146 e-value: 7.3E-7 score: 31.0
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 441..446
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 505..515
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 579..791
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 558..578
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 547..557
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 447..471
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 340..360
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 417..440
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 472..482
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 516..546
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 361..416
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..339
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 483..504
None	No IPR available	TMHMM	TMhelix		coord: 445..467
None	No IPR available	TMHMM	TMhelix		coord: 521..543
None	No IPR available	TMHMM	TMhelix		coord: 410..432
None	No IPR available	TMHMM	TMhelix		coord: 558..580
None	No IPR available	TMHMM	TMhelix		coord: 482..504
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 57..94 e-value: 4.2E-6 score: 26.6
IPR039091	Aryl hydrocarbon receptor/Aryl hydrocarbon receptor repressor	PANTHER	PTHR10649	ARYL HYDROCARBON RECEPTOR	coord: 185..675
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 42..105

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig926	contig	Ecto-sp13_S_contig926:10554..18382 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig926.20847.1	mRNA_Ecto-sp13_S_contig926.20847.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig926 10554..18382 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig926.20847.1 ID=prot_Ecto-sp13_S_contig926.20847.1|Name=mRNA_Ecto-sp13_S_contig926.20847.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=791bp
MSSRPRLVGGAALEEVEDDEEDNAYGQGGGQGAGRSVLEEMPPGEACFEA
FNVSEDVTAAILGDLDARDLARAAATSRGWRRCTSSRVLWAAVYARDFLG
HVPPLPPPPPPPDLQATLAGGGSGGGGGGGGGAQHQHRHQSRESFMLAAA
AAAAGGGGGGADGAAAAAAAAVDPRHDIFRAVWPQLPSSLSSRSGGGGGR
QHGRGGNSNRRFSSSSHHRGGGGGSGGAVAAMLGYDGSAGGGGGGGGSAS
LSDGQSFFFGDGGVGGLYGGSGGSGGSGGSGVTLLGVEDNPKEQYAKQLT
ERKARLERQQRQEILREARKRADRRRRGYERGLDCLHVRVLPPVLGMSLA
LTLVFLAAWIDGDVQANVGLLESACSDVDLLRRGCGGGGDGCAGVEGARR
PRVVRAVHLFWITHANWFAVFTPLFFCFLILCLSPCLQWASWGDGGVYLL
GMLLGWIPAVLCLVLVCSRLQGDNVSMNVIMSPLWAVDLVLILTPVAMAI
AVAVRRMQRGEPVEAMLVHTLAASWCLLTPVLAPVVAFEIALAVYVEGER
DTLTAAEVFTPLIVWCCVLSLILCGYACSYPPRHPDPQDGGGGGGGGAGD
NDDTTSSSFAPTPLRGFATRLPRPTASASVGGLGSGGRGRSRGGGGGGGY
GAAPGRSRRRQQQQQLPLPPSTMSPLPGSLPHHHHHHHHHHPHHHHPHHH
HHHYSLPRQLTPGPHASGGNGNAAAAAAGGGADMPPDMADIVALRSQLAE
LGVMAGFLDPSSPTVAAATGSIDARGIRSRNWVGGGGGGGG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR039091	AHR/AHRR
IPR036047	F-box-like_dom_sf