prot_Ecto-sp13_S_contig92354.20813.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig92354.20813.1
Unique Nameprot_Ecto-sp13_S_contig92354.20813.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length140
Homology
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A6H5K7N2_9PHAE (LysM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N2_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.210e-30
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0
Query:   75 WKTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTAPTEDGAAAAATAEPSYP 140
            WKTYTVKGGDSILSICEAQG+SVEELKAWNGLTTDLIYPGRVLVMTPTAPTEDGAAAA TAEPSYP
Sbjct:  688 WKTYTVKGGDSILSICEAQGISVEELKAWNGLTTDLIYPGRVLVMTPTAPTEDGAAAA-TAEPSYP 752          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A223KUF9_9BACI (N-acetylmuramoyl-L-alanine amidase n=1 Tax=Sutcliffiella cohnii TaxID=33932 RepID=A0A223KUF9_9BACI)

HSP 1 Score: 60.8 bits (146), Expect = 2.810e-8
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 0
Query:   77 TYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTAP 124
            TY VK GD++ SI +A  L+V+ELKA NGLT+D+IYPG+VL++   AP
Sbjct:  185 TYIVKAGDTLWSIAQAHNLTVDELKALNGLTSDIIYPGQVLIVNGQAP 232          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A0A2WMX8_THEFI (Probable endolytic peptidoglycan transglycosylase RlpA n=1 Tax=Thermus filiformis TaxID=276 RepID=A0A0A2WMX8_THEFI)

HSP 1 Score: 58.2 bits (139), Expect = 7.550e-8
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 0
Query:   76 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTA 123
            +TYTV+ GD++  I  A GLSV ELK  NGLT+DLI+PG+VL + P+A
Sbjct:   17 QTYTVQKGDTLFRIARAHGLSVTELKRLNGLTSDLIHPGQVLRVAPSA 64          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A7X7Y5G2_9FIRM (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Bacilli bacterium TaxID=1903720 RepID=A0A7X7Y5G2_9FIRM)

HSP 1 Score: 58.5 bits (140), Expect = 2.640e-7
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   76 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTAPT 125
            KTYTVK GD++  I +  G+S+ +LK WN LT+ LIYPG VL+++ +A T
Sbjct:  252 KTYTVKSGDTLSKIAQMHGISLNDLKKWNNLTSHLIYPGDVLIVSESAVT 301          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A0X8FBS0_9LACT (Peptidoglycan endopeptidase n=4 Tax=Aerococcus TaxID=1375 RepID=A0A0X8FBS0_9LACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.700e-7
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0
Query:   77 TYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPT---APTEDGAAAA 132
            TYTVK GD++ +I +A G SVE L+A NGL++D IY G+VLV+ P    AP E+  AAA
Sbjct:  182 TYTVKAGDTLPAIAQAAGTSVESLRALNGLSSDFIYAGQVLVLYPEVEEAPAEEAPAAA 240          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A1G7T6E6_9LACT (N-acetylmuramoyl-L-alanine amidase n=2 Tax=Facklamia miroungae TaxID=120956 RepID=A0A1G7T6E6_9LACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.880e-7
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 0
Query:   76 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTAP 124
            KTYTV+ GD +  I +  G+SV +LK+WN LT+DLI+PG +LV++ +AP
Sbjct:  208 KTYTVRPGDYLNKIAKQFGISVTQLKSWNNLTSDLIHPGNILVVSKSAP 256          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: UPI001FAB0A16 (septal ring lytic transglycosylase RlpA family protein n=2 Tax=unclassified Thermus TaxID=2619321 RepID=UPI001FAB0A16)

HSP 1 Score: 56.6 bits (135), Expect = 2.980e-7
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0
Query:   76 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVL 117
            +TYTV+ GD++  I +A GLSVEELK  NGLT+DLI PG+VL
Sbjct:   16 QTYTVQKGDTLYRIAKAHGLSVEELKGLNGLTSDLISPGQVL 57          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: UPI000DF3DF6A (septal ring lytic transglycosylase RlpA family protein n=1 Tax=Thermus caldifontis TaxID=1930763 RepID=UPI000DF3DF6A)

HSP 1 Score: 56.6 bits (135), Expect = 2.980e-7
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 0
Query:   76 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVL 117
            +TYTV+ GD++  I +A GLSV ELK +NGLT+DLI+PG+VL
Sbjct:   16 QTYTVQKGDTLYRIAKAHGLSVAELKRFNGLTSDLIHPGQVL 57          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: UPI0003B5C6CD (septal ring lytic transglycosylase RlpA family protein n=1 Tax=Thermus islandicus TaxID=540988 RepID=UPI0003B5C6CD)

HSP 1 Score: 55.8 bits (133), Expect = 6.180e-7
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 0
Query:   76 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLV 118
            +TYTV+ GD++  I  A GL+VE LK  NGLT+D IYPG+VLV
Sbjct:   16 QTYTVRQGDTLYRIARAHGLTVEALKGLNGLTSDRIYPGQVLV 58          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: UPI001FAD5319 (peptidoglycan endopeptidase n=2 Tax=Enterococcus cecorum TaxID=44008 RepID=UPI001FAD5319)

HSP 1 Score: 56.2 bits (134), Expect = 6.470e-7
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 0
Query:   76 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTA 123
            KTYTV  GDS+ +I    GLSV +LK  NGLT+D+IYPG+ L+++ T+
Sbjct:    9 KTYTVASGDSLWAIANKHGLSVSQLKNMNGLTSDVIYPGKQLLVSQTS 56          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7N2_9PHAE1.210e-3096.97LysM domain-containing protein (Fragment) n=1 Tax=... [more]
A0A223KUF9_9BACI2.810e-858.33N-acetylmuramoyl-L-alanine amidase n=1 Tax=Sutclif... [more]
A0A0A2WMX8_THEFI7.550e-858.33Probable endolytic peptidoglycan transglycosylase ... [more]
A0A7X7Y5G2_9FIRM2.640e-752.00LysM peptidoglycan-binding domain-containing prote... [more]
A0A0X8FBS0_9LACT2.700e-754.24Peptidoglycan endopeptidase n=4 Tax=Aerococcus Tax... [more]
A0A1G7T6E6_9LACT2.880e-753.06N-acetylmuramoyl-L-alanine amidase n=2 Tax=Facklam... [more]
UPI001FAB0A162.980e-764.29septal ring lytic transglycosylase RlpA family pro... [more]
UPI000DF3DF6A2.980e-761.90septal ring lytic transglycosylase RlpA family pro... [more]
UPI0003B5C6CD6.180e-760.47septal ring lytic transglycosylase RlpA family pro... [more]
UPI001FAD53196.470e-754.17peptidoglycan endopeptidase n=2 Tax=Enterococcus c... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainSMARTSM00257LysM_2coord: 77..120
e-value: 3.5E-9
score: 46.5
IPR018392LysM domainPFAMPF01476LysMcoord: 78..118
e-value: 4.0E-9
score: 36.4
IPR018392LysM domainPROSITEPS51782LYSMcoord: 76..119
score: 12.825
IPR036779LysM domain superfamilyGENE3D3.10.350.10coord: 75..124
e-value: 7.7E-14
score: 53.0
NoneNo IPR availableSUPERFAMILY54106LysM domaincoord: 75..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig92354contigEcto-sp13_S_contig92354:118..537 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig92354.20813.1mRNA_Ecto-sp13_S_contig92354.20813.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig92354 118..537 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig92354.20813.1 ID=prot_Ecto-sp13_S_contig92354.20813.1|Name=mRNA_Ecto-sp13_S_contig92354.20813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
DDRSTQEAAAGSVVVAGEMPQATAGRAATAAAEPPPLSSARAAATTDARS
QEQQEEVPGPAASSVDASGPPPPPWKTYTVKGGDSILSICEAQGLSVEEL
KAWNGLTTDLIYPGRVLVMTPTAPTEDGAAAAATAEPSYP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018392LysM_dom
IPR036779LysM_dom_sf