mRNA_Ecto-sp13_S_contig92354.20813.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig92354.20813.1
Unique NamemRNA_Ecto-sp13_S_contig92354.20813.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A6H5K7N2_9PHAE (LysM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N2_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.210e-30
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1
Query:  223 WKTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTAPTEDGAAAAATAEPSYP 420
            WKTYTVKGGDSILSICEAQG+SVEELKAWNGLTTDLIYPGRVLVMTPTAPTEDGAAAA TAEPSYP
Sbjct:  688 WKTYTVKGGDSILSICEAQGISVEELKAWNGLTTDLIYPGRVLVMTPTAPTEDGAAAA-TAEPSYP 752          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A223KUF9_9BACI (N-acetylmuramoyl-L-alanine amidase n=1 Tax=Sutcliffiella cohnii TaxID=33932 RepID=A0A223KUF9_9BACI)

HSP 1 Score: 60.8 bits (146), Expect = 2.810e-8
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1
Query:  229 TYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTAP 372
            TY VK GD++ SI +A  L+V+ELKA NGLT+D+IYPG+VL++   AP
Sbjct:  185 TYIVKAGDTLWSIAQAHNLTVDELKALNGLTSDIIYPGQVLIVNGQAP 232          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A0A2WMX8_THEFI (Probable endolytic peptidoglycan transglycosylase RlpA n=1 Tax=Thermus filiformis TaxID=276 RepID=A0A0A2WMX8_THEFI)

HSP 1 Score: 58.2 bits (139), Expect = 7.550e-8
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTA 369
            +TYTV+ GD++  I  A GLSV ELK  NGLT+DLI+PG+VL + P+A
Sbjct:   17 QTYTVQKGDTLFRIARAHGLSVTELKRLNGLTSDLIHPGQVLRVAPSA 64          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A7X7Y5G2_9FIRM (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Bacilli bacterium TaxID=1903720 RepID=A0A7X7Y5G2_9FIRM)

HSP 1 Score: 58.5 bits (140), Expect = 2.640e-7
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTAPT 375
            KTYTVK GD++  I +  G+S+ +LK WN LT+ LIYPG VL+++ +A T
Sbjct:  252 KTYTVKSGDTLSKIAQMHGISLNDLKKWNNLTSHLIYPGDVLIVSESAVT 301          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A0X8FBS0_9LACT (Peptidoglycan endopeptidase n=4 Tax=Aerococcus TaxID=1375 RepID=A0A0X8FBS0_9LACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.700e-7
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query:  229 TYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPT---APTEDGAAAA 396
            TYTVK GD++ +I +A G SVE L+A NGL++D IY G+VLV+ P    AP E+  AAA
Sbjct:  182 TYTVKAGDTLPAIAQAAGTSVESLRALNGLSSDFIYAGQVLVLYPEVEEAPAEEAPAAA 240          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A1G7T6E6_9LACT (N-acetylmuramoyl-L-alanine amidase n=2 Tax=Facklamia miroungae TaxID=120956 RepID=A0A1G7T6E6_9LACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.880e-7
Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1
Query:  226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTAP 372
            KTYTV+ GD +  I +  G+SV +LK+WN LT+DLI+PG +LV++ +AP
Sbjct:  208 KTYTVRPGDYLNKIAKQFGISVTQLKSWNNLTSDLIHPGNILVVSKSAP 256          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: UPI001FAB0A16 (septal ring lytic transglycosylase RlpA family protein n=2 Tax=unclassified Thermus TaxID=2619321 RepID=UPI001FAB0A16)

HSP 1 Score: 56.6 bits (135), Expect = 2.980e-7
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1
Query:  226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVL 351
            +TYTV+ GD++  I +A GLSVEELK  NGLT+DLI PG+VL
Sbjct:   16 QTYTVQKGDTLYRIAKAHGLSVEELKGLNGLTSDLISPGQVL 57          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: UPI000DF3DF6A (septal ring lytic transglycosylase RlpA family protein n=1 Tax=Thermus caldifontis TaxID=1930763 RepID=UPI000DF3DF6A)

HSP 1 Score: 56.6 bits (135), Expect = 2.980e-7
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1
Query:  226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVL 351
            +TYTV+ GD++  I +A GLSV ELK +NGLT+DLI+PG+VL
Sbjct:   16 QTYTVQKGDTLYRIAKAHGLSVAELKRFNGLTSDLIHPGQVL 57          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: UPI0003B5C6CD (septal ring lytic transglycosylase RlpA family protein n=1 Tax=Thermus islandicus TaxID=540988 RepID=UPI0003B5C6CD)

HSP 1 Score: 55.8 bits (133), Expect = 6.180e-7
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1
Query:  226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLV 354
            +TYTV+ GD++  I  A GL+VE LK  NGLT+D IYPG+VLV
Sbjct:   16 QTYTVRQGDTLYRIARAHGLTVEALKGLNGLTSDRIYPGQVLV 58          
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: UPI001FAD5319 (peptidoglycan endopeptidase n=2 Tax=Enterococcus cecorum TaxID=44008 RepID=UPI001FAD5319)

HSP 1 Score: 56.2 bits (134), Expect = 6.470e-7
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1
Query:  226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTA 369
            KTYTV  GDS+ +I    GLSV +LK  NGLT+D+IYPG+ L+++ T+
Sbjct:    9 KTYTVASGDSLWAIANKHGLSVSQLKNMNGLTSDVIYPGKQLLVSQTS 56          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7N2_9PHAE1.210e-3096.97LysM domain-containing protein (Fragment) n=1 Tax=... [more]
A0A223KUF9_9BACI2.810e-858.33N-acetylmuramoyl-L-alanine amidase n=1 Tax=Sutclif... [more]
A0A0A2WMX8_THEFI7.550e-858.33Probable endolytic peptidoglycan transglycosylase ... [more]
A0A7X7Y5G2_9FIRM2.640e-752.00LysM peptidoglycan-binding domain-containing prote... [more]
A0A0X8FBS0_9LACT2.700e-754.24Peptidoglycan endopeptidase n=4 Tax=Aerococcus Tax... [more]
A0A1G7T6E6_9LACT2.880e-753.06N-acetylmuramoyl-L-alanine amidase n=2 Tax=Facklam... [more]
UPI001FAB0A162.980e-764.29septal ring lytic transglycosylase RlpA family pro... [more]
UPI000DF3DF6A2.980e-761.90septal ring lytic transglycosylase RlpA family pro... [more]
UPI0003B5C6CD6.180e-760.47septal ring lytic transglycosylase RlpA family pro... [more]
UPI001FAD53196.470e-754.17peptidoglycan endopeptidase n=2 Tax=Enterococcus c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig92354contigEcto-sp13_S_contig92354:118..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size421
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-00_008560.1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464194.4512792-CDS-Ecto-sp13_S_contig92354:117..5371681464194.4512792-CDS-Ecto-sp13_S_contig92354:117..537Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig92354 118..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig92354.20813.1prot_Ecto-sp13_S_contig92354.20813.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig92354 118..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig92354.20813.1

>prot_Ecto-sp13_S_contig92354.20813.1 ID=prot_Ecto-sp13_S_contig92354.20813.1|Name=mRNA_Ecto-sp13_S_contig92354.20813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
DDRSTQEAAAGSVVVAGEMPQATAGRAATAAAEPPPLSSARAAATTDARS
QEQQEEVPGPAASSVDASGPPPPPWKTYTVKGGDSILSICEAQGLSVEEL
KAWNGLTTDLIYPGRVLVMTPTAPTEDGAAAAATAEPSYP
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mRNA from alignment at Ecto-sp13_S_contig92354:118..537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig92354.20813.1 ID=mRNA_Ecto-sp13_S_contig92354.20813.1|Name=mRNA_Ecto-sp13_S_contig92354.20813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92354:118..537+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGATCGGAGTACTCAGGAGGCGGCGGCAGGTTCCGTCGTTGTGGCCGG GGAGATGCCGCAGGCTACGGCGGGCAGGGCGGCGACGGCGGCGGCAGAAC CGCCACCGCTGTCTTCTGCGCGAGCAGCGGCGACGACGGACGCGCGTTCT CAGGAGCAACAGGAGGAGGTGCCAGGGCCAGCAGCATCCTCGGTTGACGC TTCAGGCCCGCCGCCGCCCCCGTGGAAGACCTACACGGTCAAGGGAGGAG ACTCCATCCTGTCCATCTGCGAGGCCCAGGGCCTGAGCGTGGAGGAACTA AAGGCGTGGAATGGGCTCACGACGGACTTGATCTATCCCGGGCGGGTGCT GGTCATGACGCCCACGGCTCCGACAGAAGACGGGGCGGCGGCAGCGGCGA CGGCGGAGCCCTCGTACCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig92354:118..537+

>mRNA_Ecto-sp13_S_contig92354.20813.1 ID=mRNA_Ecto-sp13_S_contig92354.20813.1|Name=mRNA_Ecto-sp13_S_contig92354.20813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92354:118..537+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGATCGGAGTACTCAGGAGGCGGCGGCAGGTTCCGTCGTTGTGGCCGG
GGAGATGCCGCAGGCTACGGCGGGCAGGGCGGCGACGGCGGCGGCAGAAC
CGCCACCGCTGTCTTCTGCGCGAGCAGCGGCGACGACGGACGCGCGTTCT
CAGGAGCAACAGGAGGAGGTGCCAGGGCCAGCAGCATCCTCGGTTGACGC
TTCAGGCCCGCCGCCGCCCCCGTGGAAGACCTACACGGTCAAGGGAGGAG
ACTCCATCCTGTCCATCTGCGAGGCCCAGGGCCTGAGCGTGGAGGAACTA
AAGGCGTGGAATGGGCTCACGACGGACTTGATCTATCCCGGGCGGGTGCT
GGTCATGACGCCCACGGCTCCGACAGAAGACGGGGCGGCGGCAGCGGCGA
CGGCGGAGCCCTCGTACCCC
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