mRNA_Ecto-sp13_S_contig92354.20813.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A6H5K7N2_9PHAE (LysM domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N2_9PHAE) HSP 1 Score: 125 bits (314), Expect = 1.210e-30 Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1
Query: 223 WKTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTAPTEDGAAAAATAEPSYP 420
WKTYTVKGGDSILSICEAQG+SVEELKAWNGLTTDLIYPGRVLVMTPTAPTEDGAAAA TAEPSYP
Sbjct: 688 WKTYTVKGGDSILSICEAQGISVEELKAWNGLTTDLIYPGRVLVMTPTAPTEDGAAAA-TAEPSYP 752
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A223KUF9_9BACI (N-acetylmuramoyl-L-alanine amidase n=1 Tax=Sutcliffiella cohnii TaxID=33932 RepID=A0A223KUF9_9BACI) HSP 1 Score: 60.8 bits (146), Expect = 2.810e-8 Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1
Query: 229 TYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTAP 372
TY VK GD++ SI +A L+V+ELKA NGLT+D+IYPG+VL++ AP
Sbjct: 185 TYIVKAGDTLWSIAQAHNLTVDELKALNGLTSDIIYPGQVLIVNGQAP 232
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A0A2WMX8_THEFI (Probable endolytic peptidoglycan transglycosylase RlpA n=1 Tax=Thermus filiformis TaxID=276 RepID=A0A0A2WMX8_THEFI) HSP 1 Score: 58.2 bits (139), Expect = 7.550e-8 Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1
Query: 226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTA 369
+TYTV+ GD++ I A GLSV ELK NGLT+DLI+PG+VL + P+A
Sbjct: 17 QTYTVQKGDTLFRIARAHGLSVTELKRLNGLTSDLIHPGQVLRVAPSA 64
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A7X7Y5G2_9FIRM (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Bacilli bacterium TaxID=1903720 RepID=A0A7X7Y5G2_9FIRM) HSP 1 Score: 58.5 bits (140), Expect = 2.640e-7 Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTAPT 375
KTYTVK GD++ I + G+S+ +LK WN LT+ LIYPG VL+++ +A T
Sbjct: 252 KTYTVKSGDTLSKIAQMHGISLNDLKKWNNLTSHLIYPGDVLIVSESAVT 301
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A0X8FBS0_9LACT (Peptidoglycan endopeptidase n=4 Tax=Aerococcus TaxID=1375 RepID=A0A0X8FBS0_9LACT) HSP 1 Score: 58.5 bits (140), Expect = 2.700e-7 Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 229 TYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPT---APTEDGAAAA 396
TYTVK GD++ +I +A G SVE L+A NGL++D IY G+VLV+ P AP E+ AAA
Sbjct: 182 TYTVKAGDTLPAIAQAAGTSVESLRALNGLSSDFIYAGQVLVLYPEVEEAPAEEAPAAA 240
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: A0A1G7T6E6_9LACT (N-acetylmuramoyl-L-alanine amidase n=2 Tax=Facklamia miroungae TaxID=120956 RepID=A0A1G7T6E6_9LACT) HSP 1 Score: 58.5 bits (140), Expect = 2.880e-7 Identity = 26/49 (53.06%), Postives = 38/49 (77.55%), Query Frame = 1
Query: 226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTAP 372
KTYTV+ GD + I + G+SV +LK+WN LT+DLI+PG +LV++ +AP
Sbjct: 208 KTYTVRPGDYLNKIAKQFGISVTQLKSWNNLTSDLIHPGNILVVSKSAP 256
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: UPI001FAB0A16 (septal ring lytic transglycosylase RlpA family protein n=2 Tax=unclassified Thermus TaxID=2619321 RepID=UPI001FAB0A16) HSP 1 Score: 56.6 bits (135), Expect = 2.980e-7 Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 1
Query: 226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVL 351
+TYTV+ GD++ I +A GLSVEELK NGLT+DLI PG+VL
Sbjct: 16 QTYTVQKGDTLYRIAKAHGLSVEELKGLNGLTSDLISPGQVL 57
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: UPI000DF3DF6A (septal ring lytic transglycosylase RlpA family protein n=1 Tax=Thermus caldifontis TaxID=1930763 RepID=UPI000DF3DF6A) HSP 1 Score: 56.6 bits (135), Expect = 2.980e-7 Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1
Query: 226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVL 351
+TYTV+ GD++ I +A GLSV ELK +NGLT+DLI+PG+VL
Sbjct: 16 QTYTVQKGDTLYRIAKAHGLSVAELKRFNGLTSDLIHPGQVL 57
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: UPI0003B5C6CD (septal ring lytic transglycosylase RlpA family protein n=1 Tax=Thermus islandicus TaxID=540988 RepID=UPI0003B5C6CD) HSP 1 Score: 55.8 bits (133), Expect = 6.180e-7 Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1
Query: 226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLV 354
+TYTV+ GD++ I A GL+VE LK NGLT+D IYPG+VLV
Sbjct: 16 QTYTVRQGDTLYRIARAHGLTVEALKGLNGLTSDRIYPGQVLV 58
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Match: UPI001FAD5319 (peptidoglycan endopeptidase n=2 Tax=Enterococcus cecorum TaxID=44008 RepID=UPI001FAD5319) HSP 1 Score: 56.2 bits (134), Expect = 6.470e-7 Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1
Query: 226 KTYTVKGGDSILSICEAQGLSVEELKAWNGLTTDLIYPGRVLVMTPTA 369
KTYTV GDS+ +I GLSV +LK NGLT+D+IYPG+ L+++ T+
Sbjct: 9 KTYTVASGDSLWAIANKHGLSVSQLKNMNGLTSDVIYPGKQLLVSQTS 56 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig92354.20813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig92354.20813.1 >prot_Ecto-sp13_S_contig92354.20813.1 ID=prot_Ecto-sp13_S_contig92354.20813.1|Name=mRNA_Ecto-sp13_S_contig92354.20813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp DDRSTQEAAAGSVVVAGEMPQATAGRAATAAAEPPPLSSARAAATTDARSback to top mRNA from alignment at Ecto-sp13_S_contig92354:118..537+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig92354.20813.1 ID=mRNA_Ecto-sp13_S_contig92354.20813.1|Name=mRNA_Ecto-sp13_S_contig92354.20813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92354:118..537+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig92354:118..537+ >mRNA_Ecto-sp13_S_contig92354.20813.1 ID=mRNA_Ecto-sp13_S_contig92354.20813.1|Name=mRNA_Ecto-sp13_S_contig92354.20813.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92354:118..537+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |