prot_Ecto-sp13_S_contig91092.20667.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig91092.20667.1
Unique Nameprot_Ecto-sp13_S_contig91092.20667.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length141
Homology
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BLAST of mRNA_Ecto-sp13_S_contig91092.20667.1 vs. uniprot
Match: A0A6I1I2X2_9BURK (Pilus assembly protein n=1 Tax=Janthinobacterium violaceinigrum TaxID=2654252 RepID=A0A6I1I2X2_9BURK)

HSP 1 Score: 50.4 bits (119), Expect = 7.460e-5
Identity = 31/99 (31.31%), Postives = 48/99 (48.48%), Query Frame = 0 
Query:   27 TGVNISDLASADVFPANMVNAAGDTVTHEWNGNVTLDDARQLDGLPAGRAYWQDWAAVPRDVCLDFVTGVNGASQINIEGTAVKLRGSEINATAATAEC 125
            TG     L  A V+P ++   +G+TV + WNGN+ +  A        G  +   +AAVP+DVC++ V+G N    + +   +V      I  T AT  C
Sbjct:   80 TGELTETLIGAKVYPTSLF-VSGNTVKNSWNGNIVVTGA--------GNTFTISYAAVPKDVCVNMVSGGNDWIALKVNEGSVLA--PPITPTTATTAC 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91092.20667.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6I1I2X2_9BURK7.460e-531.31Pilus assembly protein n=1 Tax=Janthinobacterium v... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014911Type 4 secretion system, PilS, N-terminalPFAMPF08805PilScoord: 2..130
e-value: 3.2E-15
score: 56.2
NoneNo IPR availableGENE3D3.30.1690.10coord: 1..137
e-value: 2.3E-19
score: 71.7
NoneNo IPR availableSUPERFAMILY54523Pili subunitscoord: 2..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91092contigEcto-sp13_S_contig91092:14..436 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91092.20667.1mRNA_Ecto-sp13_S_contig91092.20667.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig91092 14..436 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig91092.20667.1 ID=prot_Ecto-sp13_S_contig91092.20667.1|Name=mRNA_Ecto-sp13_S_contig91092.20667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
QASTQSQIVDTVDSRIQRIYNKANTFTGVNISDLASADVFPANMVNAAGD
TVTHEWNGNVTLDDARQLDGLPAGRAYWQDWAAVPRDVCLDFVTGVNGAS
QINIEGTAVKLRGSEINATAATAECGGNGTQLEIQFGFVK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014911PilS_N