mRNA_Ecto-sp13_S_contig91092.20667.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig91092.20667.1
Unique NamemRNA_Ecto-sp13_S_contig91092.20667.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig91092.20667.1 vs. uniprot
Match: A0A6I1I2X2_9BURK (Pilus assembly protein n=1 Tax=Janthinobacterium violaceinigrum TaxID=2654252 RepID=A0A6I1I2X2_9BURK)

HSP 1 Score: 50.4 bits (119), Expect = 7.460e-5
Identity = 31/99 (31.31%), Postives = 48/99 (48.48%), Query Frame = 1 
Query:   79 TGVNISDLASADVFPANMVNAAGDTVTHEWNGNVTLDDARQLDGLPAGRAYWQDWAAVPRDVCLDFVTGVNGASQINIEGTAVKLRGSEINATAATAEC 375
            TG     L  A V+P ++   +G+TV + WNGN+ +  A        G  +   +AAVP+DVC++ V+G N    + +   +V      I  T AT  C
Sbjct:   80 TGELTETLIGAKVYPTSLF-VSGNTVKNSWNGNIVVTGA--------GNTFTISYAAVPKDVCVNMVSGGNDWIALKVNEGSVLA--PPITPTTATTAC 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91092.20667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6I1I2X2_9BURK7.460e-531.31Pilus assembly protein n=1 Tax=Janthinobacterium v... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91092contigEcto-sp13_S_contig91092:14..436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size423
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464182.7793536-CDS-Ecto-sp13_S_contig91092:13..4361681464182.7793536-CDS-Ecto-sp13_S_contig91092:13..436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91092 14..436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91092.20667.1prot_Ecto-sp13_S_contig91092.20667.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig91092 14..436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig91092.20667.1

>prot_Ecto-sp13_S_contig91092.20667.1 ID=prot_Ecto-sp13_S_contig91092.20667.1|Name=mRNA_Ecto-sp13_S_contig91092.20667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
QASTQSQIVDTVDSRIQRIYNKANTFTGVNISDLASADVFPANMVNAAGD
TVTHEWNGNVTLDDARQLDGLPAGRAYWQDWAAVPRDVCLDFVTGVNGAS
QINIEGTAVKLRGSEINATAATAECGGNGTQLEIQFGFVK*
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mRNA from alignment at Ecto-sp13_S_contig91092:14..436+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig91092.20667.1 ID=mRNA_Ecto-sp13_S_contig91092.20667.1|Name=mRNA_Ecto-sp13_S_contig91092.20667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91092:14..436+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGCTAGCACGCAGTCCCAGATCGTCGATACGGTAGATAGCCGGATTCA
GAGGATTTATAACAAAGCGAATACCTTCACGGGCGTTAATATCTCGGACC
TTGCCAGCGCCGATGTGTTTCCTGCCAACATGGTAAATGCCGCAGGTGAC
ACGGTGACGCATGAGTGGAACGGAAATGTGACACTCGATGATGCAAGGCA
GCTCGACGGGCTCCCTGCAGGCCGCGCCTATTGGCAAGACTGGGCGGCAG
TCCCACGCGATGTATGTCTTGATTTTGTTACCGGCGTGAACGGTGCGTCG
CAAATAAACATTGAGGGTACGGCAGTTAAACTGAGAGGCAGCGAAATTAA
CGCGACGGCTGCGACTGCGGAATGTGGCGGGAATGGTACGCAGCTTGAAA
TTCAGTTCGGCTTCGTAAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig91092:14..436+

>mRNA_Ecto-sp13_S_contig91092.20667.1 ID=mRNA_Ecto-sp13_S_contig91092.20667.1|Name=mRNA_Ecto-sp13_S_contig91092.20667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91092:14..436+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGCTAGCACGCAGTCCCAGATCGTCGATACGGTAGATAGCCGGATTCA
GAGGATTTATAACAAAGCGAATACCTTCACGGGCGTTAATATCTCGGACC
TTGCCAGCGCCGATGTGTTTCCTGCCAACATGGTAAATGCCGCAGGTGAC
ACGGTGACGCATGAGTGGAACGGAAATGTGACACTCGATGATGCAAGGCA
GCTCGACGGGCTCCCTGCAGGCCGCGCCTATTGGCAAGACTGGGCGGCAG
TCCCACGCGATGTATGTCTTGATTTTGTTACCGGCGTGAACGGTGCGTCG
CAAATAAACATTGAGGGTACGGCAGTTAAACTGAGAGGCAGCGAAATTAA
CGCGACGGCTGCGACTGCGGAATGTGGCGGGAATGGTACGCAGCTTGAAA
TTCAGTTCGGCTTCGTAAAGTGA
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