prot_Ecto-sp13_S_contig9100.20660.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9100.20660.1
Unique Nameprot_Ecto-sp13_S_contig9100.20660.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length127
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9100.20660.1 vs. uniprot
Match: D8LSI7_ECTSI (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI7_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 7.330e-62
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0 
Query:   15 LVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSWEVLCLLLEFLAQVAALSNVNETTSELLSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNA 125
            LVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSW+VLCLLLEFLAQVAALSNVNE TSE+LSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNA
Sbjct:   70 LVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSWQVLCLLLEFLAQVAALSNVNEMTSEVLSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNA 180
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BLAST of mRNA_Ecto-sp13_S_contig9100.20660.1 vs. uniprot
Match: A0A6H5K490_9PHAE (Rho-GAP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K490_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.020e-59
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0 
Query:   15 LVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSWEVLCLLLEFLAQVAALSNVNETTSELLSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNA 125
            LVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSWEVL LLLEFLAQVAALSNVNE TSE+LSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNA
Sbjct:  275 LVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSWEVLYLLLEFLAQVAALSNVNEMTSEVLSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNA 385
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BLAST of mRNA_Ecto-sp13_S_contig9100.20660.1 vs. uniprot
Match: A0A7S2FSF7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSF7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.040e-10
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 0 
Query:   38 LQKLAVQLPHKSWEVLCLLLEFLAQVAALSNVNETTSELLSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENH 116
            L+ L   +P   W+ L  L+ FL  V   +++NE   + L+  FAPLL RP+GSA+MS+RH+Q L K++ V+++LIE+H
Sbjct:  129 LRCLLQSVPRAEWKQLKALVRFLGHVVQSAHLNELPIQSLAFLFAPLLTRPEGSAYMSVRHLQGLGKLRQVLQLLIEHH 207
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BLAST of mRNA_Ecto-sp13_S_contig9100.20660.1 vs. uniprot
Match: A0A7S2BLF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLF6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.090e-8
Identity = 29/80 (36.25%), Postives = 54/80 (67.50%), Query Frame = 0 
Query:   35 LRHLQKLAVQLPHKSWEVLCLLLEFLAQVAALSNVNETTSELLSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIE 114
            L  ++ +   LP + W  L LL+ FL+Q+A  +++N+ +S  L+  FAPLL RP GS++MS+RH++ L +++  + +L++
Sbjct:   97 LASVRGIVQSLPTQKWTELKLLVNFLSQMATCAHLNDMSSTNLAFLFAPLLGRPSGSSYMSVRHLEGLAQLRQFLVLLVD 176
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BLAST of mRNA_Ecto-sp13_S_contig9100.20660.1 vs. uniprot
Match: A0A7S3HI82_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HI82_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.320e-6
Identity = 30/81 (37.04%), Postives = 52/81 (64.20%), Query Frame = 0 
Query:   38 LQKLAVQLPHKSWEVLCLLLEFLAQVAALSNVNETTSEL--LSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENH 116
            +Q   V+LP   + +   L   L+++A   +V+E+ S L  L+ + AP +CRP  SA+MS+RH++DL KI+ V+  ++EN+
Sbjct:  104 IQNWIVKLPKAKFNLASALFRLLSRLA---SVDESDSNLIQLAYSIAPTICRPINSAYMSIRHMEDLRKIRPVISFIMENY 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9100.20660.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSI7_ECTSI7.330e-6297.30Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5K490_9PHAE1.020e-5997.30Rho-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A7S2FSF7_9STRA2.040e-1043.04Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2BLF6_9STRA5.090e-836.25Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3HI82_9STRA2.320e-637.04Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000198Rho GTPase-activating protein domainPFAMPF00620RhoGAPcoord: 35..89
e-value: 2.5E-9
score: 37.2
IPR000198Rho GTPase-activating protein domainPROSITEPS50238RHOGAPcoord: 1..120
score: 11.131
IPR008936Rho GTPase activation proteinGENE3D1.10.555.10coord: 23..124
e-value: 2.8E-13
score: 51.5
IPR008936Rho GTPase activation proteinSUPERFAMILY48350GTPase activation domain, GAPcoord: 30..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9100contigEcto-sp13_S_contig9100:3229..5414 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9100.20660.1mRNA_Ecto-sp13_S_contig9100.20660.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9100 3229..5414 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9100.20660.1 ID=prot_Ecto-sp13_S_contig9100.20660.1|Name=mRNA_Ecto-sp13_S_contig9100.20660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
GGPVEAGGAGGGSVLVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSW
EVLCLLLEFLAQVAALSNVNETTSELLSQTFAPLLCRPQGSAFMSLRHVQ
DLLKIQAVVRVLIENHTILSQNRNAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000198RhoGAP_dom
IPR008936Rho_GTPase_activation_prot