mRNA_Ecto-sp13_S_contig9100.20660.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9100.20660.1
Unique NamemRNA_Ecto-sp13_S_contig9100.20660.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9100.20660.1 vs. uniprot
Match: D8LSI7_ECTSI (Rho-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSI7_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 7.330e-62
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1 
Query:   43 LVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSWEVLCLLLEFLAQVAALSNVNETTSELLSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNA 375
            LVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSW+VLCLLLEFLAQVAALSNVNE TSE+LSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNA
Sbjct:   70 LVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSWQVLCLLLEFLAQVAALSNVNEMTSEVLSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNA 180
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BLAST of mRNA_Ecto-sp13_S_contig9100.20660.1 vs. uniprot
Match: A0A6H5K490_9PHAE (Rho-GAP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K490_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.020e-59
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 1 
Query:   43 LVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSWEVLCLLLEFLAQVAALSNVNETTSELLSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNA 375
            LVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSWEVL LLLEFLAQVAALSNVNE TSE+LSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNA
Sbjct:  275 LVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSWEVLYLLLEFLAQVAALSNVNEMTSEVLSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENHTILSQNRNA 385
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BLAST of mRNA_Ecto-sp13_S_contig9100.20660.1 vs. uniprot
Match: A0A7S2FSF7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSF7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.040e-10
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:  112 LQKLAVQLPHKSWEVLCLLLEFLAQVAALSNVNETTSELLSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENH 348
            L+ L   +P   W+ L  L+ FL  V   +++NE   + L+  FAPLL RP+GSA+MS+RH+Q L K++ V+++LIE+H
Sbjct:  129 LRCLLQSVPRAEWKQLKALVRFLGHVVQSAHLNELPIQSLAFLFAPLLTRPEGSAYMSVRHLQGLGKLRQVLQLLIEHH 207
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BLAST of mRNA_Ecto-sp13_S_contig9100.20660.1 vs. uniprot
Match: A0A7S2BLF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLF6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.090e-8
Identity = 29/80 (36.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:  103 LRHLQKLAVQLPHKSWEVLCLLLEFLAQVAALSNVNETTSELLSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIE 342
            L  ++ +   LP + W  L LL+ FL+Q+A  +++N+ +S  L+  FAPLL RP GS++MS+RH++ L +++  + +L++
Sbjct:   97 LASVRGIVQSLPTQKWTELKLLVNFLSQMATCAHLNDMSSTNLAFLFAPLLGRPSGSSYMSVRHLEGLAQLRQFLVLLVD 176
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BLAST of mRNA_Ecto-sp13_S_contig9100.20660.1 vs. uniprot
Match: A0A7S3HI82_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HI82_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.320e-6
Identity = 30/81 (37.04%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:  112 LQKLAVQLPHKSWEVLCLLLEFLAQVAALSNVNETTSEL--LSQTFAPLLCRPQGSAFMSLRHVQDLLKIQAVVRVLIENH 348
            +Q   V+LP   + +   L   L+++A   +V+E+ S L  L+ + AP +CRP  SA+MS+RH++DL KI+ V+  ++EN+
Sbjct:  104 IQNWIVKLPKAKFNLASALFRLLSRLA---SVDESDSNLIQLAYSIAPTICRPINSAYMSIRHMEDLRKIRPVISFIMENY 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9100.20660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSI7_ECTSI7.330e-6297.30Rho-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5K490_9PHAE1.020e-5997.30Rho-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A7S2FSF7_9STRA2.040e-1043.04Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2BLF6_9STRA5.090e-836.25Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3HI82_9STRA2.320e-637.04Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9100contigEcto-sp13_S_contig9100:3229..5414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score209.1
Seed ortholog evalue1.2e-51
Seed eggNOG ortholog2880.D8LSI7
Model size381
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2E3C3@1,2SAFP@2759
Cds size381
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464182.3146782-CDS-Ecto-sp13_S_contig9100:3228..33811681464182.3146782-CDS-Ecto-sp13_S_contig9100:3228..3381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9100 3229..3381 +
1681464182.3283088-CDS-Ecto-sp13_S_contig9100:4578..46621681464182.3283088-CDS-Ecto-sp13_S_contig9100:4578..4662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9100 4579..4662 +
1681464182.340832-CDS-Ecto-sp13_S_contig9100:5270..54141681464182.340832-CDS-Ecto-sp13_S_contig9100:5270..5414Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9100 5271..5414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9100.20660.1prot_Ecto-sp13_S_contig9100.20660.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9100 3229..5414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9100.20660.1

>prot_Ecto-sp13_S_contig9100.20660.1 ID=prot_Ecto-sp13_S_contig9100.20660.1|Name=mRNA_Ecto-sp13_S_contig9100.20660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
GGPVEAGGAGGGSVLVSSSPSGAGEWDAEGGTVALRHLQKLAVQLPHKSW
EVLCLLLEFLAQVAALSNVNETTSELLSQTFAPLLCRPQGSAFMSLRHVQ
DLLKIQAVVRVLIENHTILSQNRNAR*
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mRNA from alignment at Ecto-sp13_S_contig9100:3229..5414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9100.20660.1 ID=mRNA_Ecto-sp13_S_contig9100.20660.1|Name=mRNA_Ecto-sp13_S_contig9100.20660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9100:3229..5414+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGGCCGGTGGAGGCGGGCGGCGCCGGGGGCGGCAGCGTGTTGGTTTC
TTCGTCGCCGAGCGGGGCGGGCGAGTGGGACGCGGAGGGGGGGACGGTGG
CGCTACGGCACCTCCAGAAGCTGGCGGTCCAGCTGCCCCATAAGTCGTGG
GAGGTGAGGACAGGAGGGGAAGGAAGGAAGGAAGCAAGCAACCACCTTTG
TGCTGATCCGGTCGTGCGTGGTTTGCTGGACCTTGTGTGCGTGCTGTTGT
GAGGTGGGAGTATTAAGAAACACAAACACAAACACAAACACAGAAAGACT
ACCCATTCGAGATATGACCACAGACGAACTCTTTGTGTGCTTTGCGCTCT
CTTGTGTTTCGTGGGGGGGGGTGGATCTCCGTCTGCGGGACTTCGCCTTG
AGCCAAGCTGTACACGTTGCGCGGCAGGCAGGGGGTTATGTTCTGGGGGC
GGGAAGCGACAACCCCGGGTGTCGGCCAGCGTGAGCTCCGTGCCGCTGAG
CGAGGTGGCTATATTGGAAAGCGCGTGCTCTGTTGGTGCACACAACTGTG
CGTATTGGGCCCTTTGGTGTGGGTGGAGGCAGCAGCTGCCAACGGCACTT
GTTTTTTGTTACGCATGTGAAAGCCGTAAGTTTTGTCGGACGCCCCCCTT
TTGGGCCGGTTTTCAGAGCCCGATTACTCTGCGGCAGAGTCATACACGGT
GCCGAAAATGGCGGCGTTGGGACTGTCCCGTCGAGAGCTTTCGAAAAACC
CAACGCTTAATTGCGGGGTCCTCTTCGTCGTGGAGTACCTTTATCGAGTT
TTCAAATTGGACCGAAGGGGTGGTGTATCACGTCATGTAACCTGCGGTGC
TTGCCGCCTGTGTGGGTTTCCCCGCGGACCGTTGGACGCTCCTATCTCCT
CACGTGTGACAACCCGAACGCGGTTGTTGGCGATGTGTGGATTGTCTGTG
ATTATGGCAAGTGGCTCGACACATCGCGAGTTCTGGCGCTAGAAATGACG
GCTGCTGGGCCAGTCTTTCCGCCGCTTTGTGTGTACGCTGATGCCTTTTT
TTTGGAGGGTGGGTGCATCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTTTCTCTCTCTCTCTCTCCTCGTCTATTTCTCGTCCCCGATGGTTCGCC
CATGTACACGAGGCGTACTGTCTACTGCCCGAACATGAGGGGGGAGCGGC
TGTTTCTTTTTGAACGTTCGAGTGCTGAATTTTCATCGCCTTCAAGTCAG
TCGTTCGCCCTCAACAACATCAACACATGCTATTCTGCGTGCCTGCTGCT
TTCCTGCTTGGGTGATGTGGATGGCCGAATCAATCAATCGATCGATCCAG
GTACTCTGCCTGCTGCTCGAGTTCCTCGCCCAGGTCGCAGCGTTGAGCAA
CGTGAACGAGACGACCTCGGAGCTTCTCTCTCAGGTGAGAAATCCATTTG
GTCCGCCTTGTAGTAGCACCAACACATGCACCTTGGTTGTTTCTAAGACC
ACTTGAAACGGTGTGTACAACGATAGGTGGTTAATTGGATTGTGACCACG
GAAAGCGTCCGCGTCGCCCCTTGGACTAGTACGGGTAGTCGAAGGTACTC
AGCGTAGACCGGAACGGCTATCAATGTTTCAAGGCGACCTCTCACGATAC
TTTTGTAGGTTCGATGTCATGGGTCAAACCGCGGACGAGGTGGTCTACAG
ATGTTTTTCATGTTTTCCGTGTGCAAACCATGTACTTGTAGATATTTGCC
CTTCGCCACAAAAACAGGACTTGAAAGTACAACGTAAATAACTTTGAGCA
CTTGAACAAACATACGTATGAAAATGCGCAACAAGACAAGCATTGATGCG
TGAAGGGTTGGGCGACACTATGGCACACCTTTTGTACAGCCCCTGAATTA
TTGCGACTTCTGCTGGACGGTTTTTTGGCGTCCCCCTCTGAAATCTCCTA
GCCCCCCCCCCCCCCCACCGTCTTGCCCATTGCGGCCCCCGCCGGCGCCG
CCGACGAACACCGCTCCCCCTGCCGCGACACCGCCGGAGCAGACTTTCGC
CCCGCTGCTGTGCCGGCCGCAAGGGTCGGCCTTCATGTCCTTGAGACACG
TGCAGGACTTGCTGAAGATCCAGGCTGTGGTTCGGGTTCTGATCGAGAAC
CACACCATCCTCAGCCAGAACCGCAACGCAAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9100:3229..5414+

>mRNA_Ecto-sp13_S_contig9100.20660.1 ID=mRNA_Ecto-sp13_S_contig9100.20660.1|Name=mRNA_Ecto-sp13_S_contig9100.20660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9100:3229..5414+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGGCCGGTGGAGGCGGGCGGCGCCGGGGGCGGCAGCGTGTTGGTTTC
TTCGTCGCCGAGCGGGGCGGGCGAGTGGGACGCGGAGGGGGGGACGGTGG
CGCTACGGCACCTCCAGAAGCTGGCGGTCCAGCTGCCCCATAAGTCGTGG
GAGGTACTCTGCCTGCTGCTCGAGTTCCTCGCCCAGGTCGCAGCGTTGAG
CAACGTGAACGAGACGACCTCGGAGCTTCTCTCTCAGACTTTCGCCCCGC
TGCTGTGCCGGCCGCAAGGGTCGGCCTTCATGTCCTTGAGACACGTGCAG
GACTTGCTGAAGATCCAGGCTGTGGTTCGGGTTCTGATCGAGAACCACAC
CATCCTCAGCCAGAACCGCAACGCAAGGTAA
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