prot_Ecto-sp13_S_contig9085.20642.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9085.20642.1
Unique Nameprot_Ecto-sp13_S_contig9085.20642.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length147
Homology
BLAST of mRNA_Ecto-sp13_S_contig9085.20642.1 vs. uniprot
Match: D8LC38_ECTSI (Casc1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC38_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 3.800e-84
Identity = 137/157 (87.26%), Postives = 139/157 (88.54%), Query Frame = 0
Query:    1 TCITAGGIRFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGKNNGN--NDSIGADRVPGTTLVGDDADGPNANTAPGVVPNDGSAQK--------DEKIVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR 147
            TC+TAGGIR GVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQG NNGN  NDSIGA RVPGTT+ GDDADG N NT PG VPNDGSAQK        DEKIVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR
Sbjct:  205 TCMTAGGIRVGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGNNNGNSNNDSIGAGRVPGTTVGGDDADGSNTNTGPGAVPNDGSAQKAYTTHGTQDEKIVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR 361          
BLAST of mRNA_Ecto-sp13_S_contig9085.20642.1 vs. uniprot
Match: A0A6H5J7X6_9PHAE (Casc1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7X6_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 3.750e-60
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 0
Query:    1 TCITAGGIRFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGKNNGN--NDSIGADRVPGTTLVGDDADGPNANTAPGVVPNDGSAQKDE 108
            TC+TAGGIRFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQG +NGN  NDSIGA RVPGT++VGDDADG NANTAPGVVPNDGSAQK E
Sbjct:  145 TCMTAGGIRFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGNSNGNSNNDSIGAGRVPGTSVVGDDADGSNANTAPGVVPNDGSAQKVE 254          
BLAST of mRNA_Ecto-sp13_S_contig9085.20642.1 vs. uniprot
Match: A0A835Z3C6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.420e-18
Identity = 51/129 (39.53%), Postives = 68/129 (52.71%), Query Frame = 0
Query:   19 KGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGKNNGNNDSIGADRVPGTTLVGDDADGPNANTAPGVVPNDGSAQKDEKIVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR 147
            K FRM+T+DF  A MSTDVPRPLS A VA+RN+F+PY  +                              P  N A G   + G       +VLGG F LE++A+PPG+K++ GW+FR   EL+  +AR
Sbjct:   18 KAFRMRTIDFTEASMSTDVPRPLSTARVALRNLFLPYCHI------------------------------PKDNLAEGQSSSAGDDGGTRWMVLGGIFALELLAMPPGVKRMAGWLFRPVGELATRIAR 116          
BLAST of mRNA_Ecto-sp13_S_contig9085.20642.1 vs. uniprot
Match: A0A7S4EUD6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EUD6_CHRCT)

HSP 1 Score: 58.2 bits (139), Expect = 4.450e-7
Identity = 43/153 (28.10%), Postives = 67/153 (43.79%), Query Frame = 0
Query:    9 RFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGKNNGNNDSIGADRVPGTTLVGDDADGPNANTAPGVVPNDGSAQKDEK--------------IVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR 147
            +FG+WVN++ K  R+K++DF    +ST++P+ L+ AS+A+R                             T +  D    P A+ A G V                         + +GG   LE+++LPP +KK++GW  R  TELS  V R
Sbjct:  238 KFGLWVNLA-KNPRVKSIDFTELQISTELPKSLALASIAIR----------------------------ATHMTADRLSRPPADKATGAVDTTXXXXXXXXXXXXXXXXXXXXPLMSVGGVLSLELLSLPPPVKKVRGWTMRQVTELSYKVQR 361          
BLAST of mRNA_Ecto-sp13_S_contig9085.20642.1 vs. uniprot
Match: A0A7S4B3M2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B3M2_CHRCT)

HSP 1 Score: 58.2 bits (139), Expect = 4.750e-7
Identity = 43/153 (28.10%), Postives = 67/153 (43.79%), Query Frame = 0
Query:    9 RFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGKNNGNNDSIGADRVPGTTLVGDDADGPNANTAPGVVPNDGSAQKDEK--------------IVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR 147
            +FG+WVN++ K  R+K++DF    +ST++P+ L+ AS+A+R                             T +  D    P A+ A G V                         + +GG   LE+++LPP +KK++GW  R  TELS  V R
Sbjct:  238 KFGLWVNLA-KNPRVKSIDFTELQISTELPKSLALASIAIR----------------------------ATHMTADRLSRPPADKATGAVDTTXXXXXXXXXXXXXXXXXXXXPLMSVGGVLSLELLSLPPPVKKVRGWTMRQVTELSYKVQR 361          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9085.20642.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LC38_ECTSI3.800e-8487.26Casc1_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5J7X6_9PHAE3.750e-6090.91Casc1_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835Z3C6_9STRA2.420e-1839.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4EUD6_CHRCT4.450e-728.10Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4B3M2_CHRCT4.750e-728.10Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9085contigEcto-sp13_S_contig9085:191..1629 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9085.20642.1mRNA_Ecto-sp13_S_contig9085.20642.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9085 190..1629 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9085.20642.1 ID=prot_Ecto-sp13_S_contig9085.20642.1|Name=mRNA_Ecto-sp13_S_contig9085.20642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
TCITAGGIRFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRN
IFVPYRFVRNQGKNNGNNDSIGADRVPGTTLVGDDADGPNANTAPGVVPN
DGSAQKDEKIVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR
back to top