mRNA_Ecto-sp13_S_contig9085.20642.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9085.20642.1
Unique NamemRNA_Ecto-sp13_S_contig9085.20642.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9085.20642.1 vs. uniprot
Match: D8LC38_ECTSI (Casc1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC38_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 3.800e-84
Identity = 137/157 (87.26%), Postives = 139/157 (88.54%), Query Frame = 1 
Query:    1 TCITAGGIRFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGKNNGN--NDSIGADRVPGTTLVGDDADGPNANTAPGVVPNDGSAQK--------DEKIVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR 441
            TC+TAGGIR GVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQG NNGN  NDSIGA RVPGTT+ GDDADG N NT PG VPNDGSAQK        DEKIVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR
Sbjct:  205 TCMTAGGIRVGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGNNNGNSNNDSIGAGRVPGTTVGGDDADGSNTNTGPGAVPNDGSAQKAYTTHGTQDEKIVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR 361
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BLAST of mRNA_Ecto-sp13_S_contig9085.20642.1 vs. uniprot
Match: A0A6H5J7X6_9PHAE (Casc1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7X6_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 3.750e-60
Identity = 100/110 (90.91%), Postives = 104/110 (94.55%), Query Frame = 1 
Query:    1 TCITAGGIRFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGKNNGN--NDSIGADRVPGTTLVGDDADGPNANTAPGVVPNDGSAQKDE 324
            TC+TAGGIRFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQG +NGN  NDSIGA RVPGT++VGDDADG NANTAPGVVPNDGSAQK E
Sbjct:  145 TCMTAGGIRFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGNSNGNSNNDSIGAGRVPGTSVVGDDADGSNANTAPGVVPNDGSAQKVE 254
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BLAST of mRNA_Ecto-sp13_S_contig9085.20642.1 vs. uniprot
Match: A0A835Z3C6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.420e-18
Identity = 51/129 (39.53%), Postives = 68/129 (52.71%), Query Frame = 1 
Query:   55 KGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGKNNGNNDSIGADRVPGTTLVGDDADGPNANTAPGVVPNDGSAQKDEKIVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR 441
            K FRM+T+DF  A MSTDVPRPLS A VA+RN+F+PY  +                              P  N A G   + G       +VLGG F LE++A+PPG+K++ GW+FR   EL+  +AR
Sbjct:   18 KAFRMRTIDFTEASMSTDVPRPLSTARVALRNLFLPYCHI------------------------------PKDNLAEGQSSSAGDDGGTRWMVLGGIFALELLAMPPGVKRMAGWLFRPVGELATRIAR 116
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BLAST of mRNA_Ecto-sp13_S_contig9085.20642.1 vs. uniprot
Match: A0A7S4EUD6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EUD6_CHRCT)

HSP 1 Score: 58.2 bits (139), Expect = 4.450e-7
Identity = 43/153 (28.10%), Postives = 67/153 (43.79%), Query Frame = 1 
Query:   25 RFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGKNNGNNDSIGADRVPGTTLVGDDADGPNANTAPGVVPNDGSAQKDEK--------------IVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR 441
            +FG+WVN++ K  R+K++DF    +ST++P+ L+ AS+A+R                             T +  D    P A+ A G V                         + +GG   LE+++LPP +KK++GW  R  TELS  V R
Sbjct:  238 KFGLWVNLA-KNPRVKSIDFTELQISTELPKSLALASIAIR----------------------------ATHMTADRLSRPPADKATGAVDTTXXXXXXXXXXXXXXXXXXXXPLMSVGGVLSLELLSLPPPVKKVRGWTMRQVTELSYKVQR 361
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BLAST of mRNA_Ecto-sp13_S_contig9085.20642.1 vs. uniprot
Match: A0A7S4B3M2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B3M2_CHRCT)

HSP 1 Score: 58.2 bits (139), Expect = 4.750e-7
Identity = 43/153 (28.10%), Postives = 67/153 (43.79%), Query Frame = 1 
Query:   25 RFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRNIFVPYRFVRNQGKNNGNNDSIGADRVPGTTLVGDDADGPNANTAPGVVPNDGSAQKDEK--------------IVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR 441
            +FG+WVN++ K  R+K++DF    +ST++P+ L+ AS+A+R                             T +  D    P A+ A G V                         + +GG   LE+++LPP +KK++GW  R  TELS  V R
Sbjct:  238 KFGLWVNLA-KNPRVKSIDFTELQISTELPKSLALASIAIR----------------------------ATHMTADRLSRPPADKATGAVDTTXXXXXXXXXXXXXXXXXXXXPLMSVGGVLSLELLSLPPPVKKVRGWTMRQVTELSYKVQR 361
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9085.20642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LC38_ECTSI3.800e-8487.26Casc1_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5J7X6_9PHAE3.750e-6090.91Casc1_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835Z3C6_9STRA2.420e-1839.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4EUD6_CHRCT4.450e-728.10Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4B3M2_CHRCT4.750e-728.10Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9085contigEcto-sp13_S_contig9085:190..1629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score262.3
Seed ortholog evalue1.3e-67
Seed eggNOG ortholog2880.D8LC38
Preferred nameCASC1
Model size443
KEGG koko:K17580
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0007017,GO:0007018,GO:0008017,GO:0008092,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0030286,GO:0032838,GO:0032991,GO:0036156,GO:0042995,GO:0043014,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0048487,GO:0051012,GO:0097014,GO:0099568,GO:0120025,GO:0120038,GO:1902494
Exons3
EggNOG free text desc.Cancer susceptibility candidate 1 N-terminus
EggNOG OGs28IAT@1,2QQM9@2759
Cds size441
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464180.6651878-CDS-Ecto-sp13_S_contig9085:190..2381681464180.6651878-CDS-Ecto-sp13_S_contig9085:190..238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9085 191..238 -
1681464180.6833446-CDS-Ecto-sp13_S_contig9085:771..8461681464180.6833446-CDS-Ecto-sp13_S_contig9085:771..846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9085 772..846 -
1681464180.6950197-CDS-Ecto-sp13_S_contig9085:1311..16291681464180.6950197-CDS-Ecto-sp13_S_contig9085:1311..1629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9085 1312..1629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9085.20642.1prot_Ecto-sp13_S_contig9085.20642.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9085 191..1629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9085.20642.1

>prot_Ecto-sp13_S_contig9085.20642.1 ID=prot_Ecto-sp13_S_contig9085.20642.1|Name=mRNA_Ecto-sp13_S_contig9085.20642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
TCITAGGIRFGVWVNVSLKGFRMKTVDFAAAGMSTDVPRPLSGASVAVRN
IFVPYRFVRNQGKNNGNNDSIGADRVPGTTLVGDDADGPNANTAPGVVPN
DGSAQKDEKIVLGGTFFLEIVALPPGIKKIKGWVFRAETELSKAVAR
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mRNA from alignment at Ecto-sp13_S_contig9085:190..1629-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9085.20642.1 ID=mRNA_Ecto-sp13_S_contig9085.20642.1|Name=mRNA_Ecto-sp13_S_contig9085.20642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1440bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9085:190..1629- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTGCATCACAGCGGGCGGGATCCGCTTCGGGGTTTGGGTCAACGTCAG
CCTCAAGGGTTTCCGCATGAAGACGGTGGATTTTGCCGCAGCGGGGATGA
GTACGGACGTACCGCGTCCTCTTTCCGGCGCAAGCGTGGCCGTTCGGAAC
ATCTTCGTGCCATACCGCTTCGTGCGCAACCAAGGAAAAAACAACGGCAA
CAACGACAGCATCGGAGCCGACAGGGTTCCCGGGACAACATTGGTGGGGG
ATGACGCAGATGGACCTAATGCCAACACCGCTCCGGGAGTTGTGCCGAAT
GACGGATCAGCGCAAAAGGTGGAAACAGCACAACTGCGCACACGCCACCT
CTCACGACGCTAATGATGGCTTTCTCTTGACGTGTTTGCGTGGTTCTGCA
GAATCGGGCAACCCTACTCAGCCAGCTAGGTTTCCTACGCTACAAGAGGG
GCCAAGGCTTCTCTCCGATGTCCCTCGCCGCAATCTCGTTTGCTCTAGAA
CATTGTACGGGAAGGAAAGTTTTTCATGAAGAGAAACGAAAGGCAGGAAA
GCGTCGAAAACTCCTGCACAAACCACACTTTGCCCGAGCTAAGGCTCTGC
ACAACGAATCCGCGCTACGCCGAGAAACTGCTTATCGGTCGTTCATTTCA
TTGATGTTGGATACCTAACGCGCCTGTATCACGCTACAGAGTTTGTTGGT
CGTTCGCCGAGTTGCCTCGCTTCTCACCCATGCCCTCTCCGTGCCCCCGC
CCTCGACATGCCTTCACTACTCACGCTACACAGGACGAGAAGATCGTGCT
TGGGGGCACTTTCTTCTTGGAGATCGTAGCCCTTCCACCGGGAATTAAGA
AAATAAAGGTGAAACGCACTCGAGAGGAACCCCCCAAGTCTGAGTCGCGC
CAACGCTTCATTAATATCTATCTGTAAGGTTGTTTTTACAAGTGCTCTCC
CATGAGATCCGAGGTCATGAATCCCCTTCATTCTCGGAAAAGCGGCGATG
TTGCATGCATGCTTACGACGTACAGCCCCTTGACTGATCCTTGTGTCGAG
TATCGTGTTCCGCTCGCGTCACCACCGAAAACAATTTTGGTTTTGAAACG
GCAACAATCGACCCACCGGCGGACCACATCTTGTACTCTTAACACTACAT
TACTCGCGATCCGTACCATGAATATTTTCCTTGGTGTCCGTAACATGAGT
ATTTTCACAACCGGTTCTCCAGTCCCCAATGCAGCACAAACGATTTTATT
GAGACCTTTTAACCCCACCCAAACCTATGCGAGTGTATTGCCAAGTAAAA
CAGGTTCCAACAACCACCTAGTGGCTACCCTAACGCCTGAAGGGTAACCC
GGGCGACCCGTATTGTTGCGGAAAACCGTGTCGTTCCTCAGGGATGGGTG
TTTCGCGCGGAGACGGAGCTTTCCAAGGCCGTTGCCCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9085:190..1629-

>mRNA_Ecto-sp13_S_contig9085.20642.1 ID=mRNA_Ecto-sp13_S_contig9085.20642.1|Name=mRNA_Ecto-sp13_S_contig9085.20642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9085:190..1629- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGTGCATCACAGCGGGCGGGATCCGCTTCGGGGTTTGGGTCAACGTCAG
CCTCAAGGGTTTCCGCATGAAGACGGTGGATTTTGCCGCAGCGGGGATGA
GTACGGACGTACCGCGTCCTCTTTCCGGCGCAAGCGTGGCCGTTCGGAAC
ATCTTCGTGCCATACCGCTTCGTGCGCAACCAAGGAAAAAACAACGGCAA
CAACGACAGCATCGGAGCCGACAGGGTTCCCGGGACAACATTGGTGGGGG
ATGACGCAGATGGACCTAATGCCAACACCGCTCCGGGAGTTGTGCCGAAT
GACGGATCAGCGCAAAAGGACGAGAAGATCGTGCTTGGGGGCACTTTCTT
CTTGGAGATCGTAGCCCTTCCACCGGGAATTAAGAAAATAAAGGGATGGG
TGTTTCGCGCGGAGACGGAGCTTTCCAAGGCCGTTGCCCGG
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