prot_Ecto-sp13_S_contig908.20636.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig908.20636.1
Unique Nameprot_Ecto-sp13_S_contig908.20636.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length798
Homology
BLAST of mRNA_Ecto-sp13_S_contig908.20636.1 vs. uniprot
Match: A0A6H5JZC9_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC9_9PHAE)

HSP 1 Score: 1046 bits (2705), Expect = 0.000e+0
Identity = 617/812 (75.99%), Postives = 647/812 (79.68%), Query Frame = 0
Query:   56 MARLSDSDFDDRGAAGQRPLPHHHRGWQTRERTAGGSARSPLRESPASNRDGSAADPREVSSSKSLRPYDIPYATGNGNAAAVNVHTTAGTTASAEAGKVPG-IDDKGIVLRC-----------------------------------MYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKILGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQPDDNAFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RKLFKAFKPPARREPTPATQPEDSWGRLPPGGVGFRGNGDRGGDGRFPSDRGGRQLSPRTTYTGFGHVESLWDEDEEQE-GQDRREDGAGLAGEHGAGWGMGGAAGPAYQNPYDGGNESGVLREARSEAAVHPPYHRSTGTSAVGNTNAWMWGPPAGEHSLDGPPQPSRSTADFASGSPGQXXXXXXXXXXXXXXX----------------------DDAGGRSASHYPENQRCGRDGAVTSAGGTSSTEASTFGRGNAIGGAGARVPEEIDRETPGDGARVEMRSTQDILSLFGGFGGTPSTQGGHDHGSQERKTAESQRHGPTEAPLGSQASGDALMAVGGGIRRAADMRRAQKETRAA---------AATAVPGGSVA-GAPNDEAVTGDWACGTCGVRGDPSSASCRVCGAKRQGLRSDGVAQGGDDGVTGGIGSQERRVGWGRGDDLSGVGQRLEQASEGGAGDVGDRPDTLGLAEGLEAEGAPGGWRTSSPDRLAFPQSGTGGGGESACGGRALETPSNCRKIGPRMQIDMGSSSDSDDA 797
            MARLSDS   +RG  GQRP P HHRGWQ RERTA G ARSP RESPASNRDGSAA+PR+ SSSKSLRP+DIPYATGN  AAAVN  TTAGTTASAE GKVPG IDDKGIVLRC                                   MYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEK+LGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQ DDNA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RK+FKAFKPPARREPTPA QP+DSWGRLPPGGV  RGNGDRGGDGRFPS+RGG +LSPRTTYTGFGHVESLWDEDEE++ GQDR EDGAGLA EH AGWGMGGAAGP YQNPYD GNES VL++ARSEAAV PPYHRSTGTSAVG+TN WMWGPPAGEHSLDGP +PSRSTADFASGSP Q                                     DD G RSASHYPENQRCGRDGAVT+AGGT   E +TFGRGNAIGGAG+RV EE+DRETPGDGAR+EMRSTQDILSLFGGFGGTPSTQGGHDHG QER+TAESQ  GPTEAPLGSQASGDALM VGGGIRRA DMRR QKE RAA          A AV G + A GA ND+AVTGDWACGTCGVRG  SSASCRVCGAKRQ LRSDGVAQGGDDGV GGIGSQE RVGWGRGDD  G  +  ++A EG AGDVGDRP  LG+AEGLEA GAPG WRTSSPDR AFPQSG GGGGE A GG  LETPS+CRKIG RMQ+DMGSSSDSD+A
Sbjct:    1 MARLSDSHNVERGV-GQRPPPQHHRGWQARERTASGGARSPSRESPASNRDGSAANPRKASSSKSLRPHDIPYATGNSYAAAVN--TTAGTTASAEPGKVPGGIDDKGIVLRCVDTGRPGYVCVETTANRVRFFLSDVALLPAVLPRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQSDDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRKIFKAFKPPARREPTPAPQPDDSWGRLPPGGVSLRGNGDRGGDGRFPSNRGGGKLSPRTTYTGFGHVESLWDEDEEEDDGQDRHEDGAGLADEHRAGWGMGGAAGPGYQNPYDVGNESDVLQQARSEAAVQPPYHRSTGTSAVGSTNTWMWGPPAGEHSLDGPLRPSRSTADFASGSPAQQQQQERGRHDETAVPGHHGEDGPSSYLERLRRGNDDDDDVGRRSASHYPENQRCGRDGAVTAAGGTGGREENTFGRGNAIGGAGSRVSEEVDRETPGDGARMEMRSTQDILSLFGGFGGTPSTQGGHDHGEQERETAESQWRGPTEAPLGSQASGDALMPVGGGIRRAVDMRRTQKEARAAXXXXXXXXXVAGAVTGAASARGASNDDAVTGDWACGTCGVRGGSSSASCRVCGAKRQELRSDGVAQGGDDGVRGGIGSQEGRVGWGRGDDFGGGERPQKKALEGRAGDVGDRPVILGIAEGLEA-GAPGRWRTSSPDRPAFPQSGAGGGGEGAFGGSVLETPSSCRKIGHRMQMDMGSSSDSDEA 808          
BLAST of mRNA_Ecto-sp13_S_contig908.20636.1 vs. uniprot
Match: D8LRG4_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG4_ECTSI)

HSP 1 Score: 646 bits (1666), Expect = 7.590e-224
Identity = 399/706 (56.52%), Postives = 414/706 (58.64%), Query Frame = 0
Query:  103 SNRDGSAADPREVSSSKSLRPYDIPYATGNGNAAAVNVHTTAGTTASAEAGKVPG-IDDKGIVLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKILGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQPDDNAFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKLFKAFKPPARREPTPATQPEDSWGRLPPGGVGFRGNGDRGGDGRFPSDRGGRQLSPRTTYTGFGHVESLWDEDEEQEGQDRREDGAGLAGEHGAGWGMGGAAGPAYQNPYDGGNESGVLREARSEAAVHPPYHRSTGTSAVGNTNAWMWGPPAGEHSLDGPPQPSRSTADFASGSPGQXXXXXXXXXXXXXXXDDAGGRSASHYPENQRCGRDGAVTSAGGTSSTEASTFGRGNAIGGAGARVPEEIDRETPGDGARVEMRSTQDILSLFGGFGGTPSTQGGHDHGSQERKTAESQRHGPTEAPLGSQASGDALMAVGGGIRRAADMRRAQKETRAAAATAVP----------GGSVAGAPNDEAVTGDWACGTCGVRGDPSSASCRVCGAKRQGLRSDGVAQGGDDGVTGGIGSQERRVGWGRGDDLSGVGQRLEQASEGGAGDVGDRPDTLGLAEGLEAEGAPGGWRTSSPDRLAFPQSGTGGGGESACGGRALETPSNCRKIGPRMQIDMGSSSDSDDA 797
            SNRDGSAADPR+ SSSKSLRPYDIPYATGN NAAAVN  TTAGT ASAEAGKVPG IDDKGIVLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEK+LGEVYLTVPQYEAFITQGEPELEMEL                                                                                        RG DG                                                                                                                                                      DDAGGRSASHYPENQRCGRDGAVT+AGGT   E +TFGRGNAIGGAGARVPEE+DRETPG  ARVEMRSTQDILSLFGGFGGTPSTQGGHDHGS  R+TAE+QRHGPTEAPLGSQASGDAL  VGGGIRRAADM RAQKE RAAAAT               S  GAPND+AV GDW CGTCGVRGDPSSASCRVCGAKR+GLRSDGVAQGGDDGV GGIGSQE RVGWGRGDD  G G+R E+ASEGGAGDVGDRP TLG+AEGLEA GAPG WRTSSPDR AFPQS  GGGGE ACG   LETPS+C+KIGPRMQ+DMGSSSDSDDA
Sbjct:   26 SNRDGSAADPRKASSSKSLRPYDIPYATGNSNAAAVN--TTAGTAASAEAGKVPGGIDDKGIVLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELLR--------------------------------------------------------------------------------------RGDDG------------------------------------------------------------------------------------------------------------------------------------------------------DDAGGRSASHYPENQRCGRDGAVTAAGGTGGREENTFGRGNAIGGAGARVPEEVDRETPGYVARVEMRSTQDILSLFGGFGGTPSTQGGHDHGSHGRETAETQRHGPTEAPLGSQASGDALRPVGGGIRRAADMHRAQKEARAAAATVXXXXXXXXXXTGASSARGAPNDDAVMGDWVCGTCGVRGDPSSASCRVCGAKREGLRSDGVAQGGDDGVRGGIGSQEGRVGWGRGDDFGGGGRRQEKASEGGAGDVGDRPVTLGIAEGLEAGGAPGRWRTSSPDRPAFPQSRAGGGGEGACGVSVLETPSSCQKIGPRMQMDMGSSSDSDDA 493          
BLAST of mRNA_Ecto-sp13_S_contig908.20636.1 vs. uniprot
Match: A0A835YK32_9STRA (DUF2439 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK32_9STRA)

HSP 1 Score: 118 bits (295), Expect = 8.960e-24
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 0
Query:  164 VLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKILGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQ 245
            VLRC++T+Q TKKRKTW DGAV+CC KR  V+LY+WS+ LGVTEK LGE +L   ++ AF+TQ EPELEME Y+V+L+GV +
Sbjct:   10 VLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTE 91          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig908.20636.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZC9_9PHAE0.000e+075.99RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D8LRG4_ECTSI7.590e-22456.52RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A835YK32_9STRA8.960e-2463.41DUF2439 domain-containing protein n=1 Tax=Tribonem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.1060.10coord: 637..675
e-value: 4.0E-6
score: 27.9
IPR018838Domain of unknown function DUF2439PFAMPF10382DUF2439coord: 166..243
e-value: 4.4E-9
score: 36.6
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 641..670
score: 8.739

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig908contigEcto-sp13_S_contig908:9612..13172 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig908.20636.1mRNA_Ecto-sp13_S_contig908.20636.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig908 9612..13172 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig908.20636.1 ID=prot_Ecto-sp13_S_contig908.20636.1|Name=mRNA_Ecto-sp13_S_contig908.20636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=798bp
IVVAASWHLDTQRRSETGSSIDRHTRVLATCEVIGVDISCERPIHDPSTR
ASHFKMARLSDSDFDDRGAAGQRPLPHHHRGWQTRERTAGGSARSPLRES
PASNRDGSAADPREVSSSKSLRPYDIPYATGNGNAAAVNVHTTAGTTASA
EAGKVPGIDDKGIVLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWS
EALGVTEKILGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQPDDNA
FGGGAGSAATPAENTAATGAFGGGGTTAAAGKKRKLFKAFKPPARREPTP
ATQPEDSWGRLPPGGVGFRGNGDRGGDGRFPSDRGGRQLSPRTTYTGFGH
VESLWDEDEEQEGQDRREDGAGLAGEHGAGWGMGGAAGPAYQNPYDGGNE
SGVLREARSEAAVHPPYHRSTGTSAVGNTNAWMWGPPAGEHSLDGPPQPS
RSTADFASGSPGQQQQQQQDLRRGDDDVDDAGGRSASHYPENQRCGRDGA
VTSAGGTSSTEASTFGRGNAIGGAGARVPEEIDRETPGDGARVEMRSTQD
ILSLFGGFGGTPSTQGGHDHGSQERKTAESQRHGPTEAPLGSQASGDALM
AVGGGIRRAADMRRAQKETRAAAATAVPGGSVAGAPNDEAVTGDWACGTC
GVRGDPSSASCRVCGAKRQGLRSDGVAQGGDDGVTGGIGSQERRVGWGRG
DDLSGVGQRLEQASEGGAGDVGDRPDTLGLAEGLEAEGAPGGWRTSSPDR
LAFPQSGTGGGGESACGGRALETPSNCRKIGPRMQIDMGSSSDSDDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018838DUF2439
IPR001876Znf_RanBP2