mRNA_Ecto-sp13_S_contig908.20636.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig908.20636.1
Unique NamemRNA_Ecto-sp13_S_contig908.20636.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig908.20636.1 vs. uniprot
Match: A0A6H5JZC9_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC9_9PHAE)

HSP 1 Score: 1046 bits (2705), Expect = 0.000e+0
Identity = 617/812 (75.99%), Postives = 647/812 (79.68%), Query Frame = 1 
Query:  166 MARLSDSDFDDRGAAGQRPLPHHHRGWQTRERTAGGSARSPLRESPASNRDGSAADPREVSSSKSLRPYDIPYATGNGNAAAVNVHTTAGTTASAEAGKVPG-IDDKGIVLRC-----------------------------------MYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKILGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQPDDNAFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RKLFKAFKPPARREPTPATQPEDSWGRLPPGGVGFRGNGDRGGDGRFPSDRGGRQLSPRTTYTGFGHVESLWDEDEEQE-GQDRREDGAGLAGEHGAGWGMGGAAGPAYQNPYDGGNESGVLREARSEAAVHPPYHRSTGTSAVGNTNAWMWGPPAGEHSLDGPPQPSRSTADFASGSPGQXXXXXXXXXXXXXXX----------------------DDAGGRSASHYPENQRCGRDGAVTSAGGTSSTEASTFGRGNAIGGAGARVPEEIDRETPGDGARVEMRSTQDILSLFGGFGGTPSTQGGHDHGSQERKTAESQRHGPTEAPLGSQASGDALMAVGGGIRRAADMRRAQKETRAA---------AATAVPGGSVA-GAPNDEAVTGDWACGTCGVRGDPSSASCRVCGAKRQGLRSDGVAQGGDDGVTGGIGSQERRVGWGRGDDLSGVGQRLEQASEGGAGDVGDRPDTLGLAEGLEAEGAPGGWRTSSPDRLAFPQSGTGGGGESACGGRALETPSNCRKIGPRMQIDMGSSSDSDDA 2391
            MARLSDS   +RG  GQRP P HHRGWQ RERTA G ARSP RESPASNRDGSAA+PR+ SSSKSLRP+DIPYATGN  AAAVN  TTAGTTASAE GKVPG IDDKGIVLRC                                   MYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEK+LGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQ DDNA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  RK+FKAFKPPARREPTPA QP+DSWGRLPPGGV  RGNGDRGGDGRFPS+RGG +LSPRTTYTGFGHVESLWDEDEE++ GQDR EDGAGLA EH AGWGMGGAAGP YQNPYD GNES VL++ARSEAAV PPYHRSTGTSAVG+TN WMWGPPAGEHSLDGP +PSRSTADFASGSP Q                                     DD G RSASHYPENQRCGRDGAVT+AGGT   E +TFGRGNAIGGAG+RV EE+DRETPGDGAR+EMRSTQDILSLFGGFGGTPSTQGGHDHG QER+TAESQ  GPTEAPLGSQASGDALM VGGGIRRA DMRR QKE RAA          A AV G + A GA ND+AVTGDWACGTCGVRG  SSASCRVCGAKRQ LRSDGVAQGGDDGV GGIGSQE RVGWGRGDD  G  +  ++A EG AGDVGDRP  LG+AEGLEA GAPG WRTSSPDR AFPQSG GGGGE A GG  LETPS+CRKIG RMQ+DMGSSSDSD+A
Sbjct:    1 MARLSDSHNVERGV-GQRPPPQHHRGWQARERTASGGARSPSRESPASNRDGSAANPRKASSSKSLRPHDIPYATGNSYAAAVN--TTAGTTASAEPGKVPGGIDDKGIVLRCVDTGRPGYVCVETTANRVRFFLSDVALLPAVLPRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQSDDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRKIFKAFKPPARREPTPAPQPDDSWGRLPPGGVSLRGNGDRGGDGRFPSNRGGGKLSPRTTYTGFGHVESLWDEDEEEDDGQDRHEDGAGLADEHRAGWGMGGAAGPGYQNPYDVGNESDVLQQARSEAAVQPPYHRSTGTSAVGSTNTWMWGPPAGEHSLDGPLRPSRSTADFASGSPAQQQQQERGRHDETAVPGHHGEDGPSSYLERLRRGNDDDDDVGRRSASHYPENQRCGRDGAVTAAGGTGGREENTFGRGNAIGGAGSRVSEEVDRETPGDGARMEMRSTQDILSLFGGFGGTPSTQGGHDHGEQERETAESQWRGPTEAPLGSQASGDALMPVGGGIRRAVDMRRTQKEARAAXXXXXXXXXVAGAVTGAASARGASNDDAVTGDWACGTCGVRGGSSSASCRVCGAKRQELRSDGVAQGGDDGVRGGIGSQEGRVGWGRGDDFGGGERPQKKALEGRAGDVGDRPVILGIAEGLEA-GAPGRWRTSSPDRPAFPQSGAGGGGEGAFGGSVLETPSSCRKIGHRMQMDMGSSSDSDEA 808
[Close]
BLAST of mRNA_Ecto-sp13_S_contig908.20636.1 vs. uniprot
Match: D8LRG4_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG4_ECTSI)

HSP 1 Score: 646 bits (1666), Expect = 7.590e-224
Identity = 399/706 (56.52%), Postives = 414/706 (58.64%), Query Frame = 1 
Query:  307 SNRDGSAADPREVSSSKSLRPYDIPYATGNGNAAAVNVHTTAGTTASAEAGKVPG-IDDKGIVLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKILGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQPDDNAFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKLFKAFKPPARREPTPATQPEDSWGRLPPGGVGFRGNGDRGGDGRFPSDRGGRQLSPRTTYTGFGHVESLWDEDEEQEGQDRREDGAGLAGEHGAGWGMGGAAGPAYQNPYDGGNESGVLREARSEAAVHPPYHRSTGTSAVGNTNAWMWGPPAGEHSLDGPPQPSRSTADFASGSPGQXXXXXXXXXXXXXXXDDAGGRSASHYPENQRCGRDGAVTSAGGTSSTEASTFGRGNAIGGAGARVPEEIDRETPGDGARVEMRSTQDILSLFGGFGGTPSTQGGHDHGSQERKTAESQRHGPTEAPLGSQASGDALMAVGGGIRRAADMRRAQKETRAAAATAVP----------GGSVAGAPNDEAVTGDWACGTCGVRGDPSSASCRVCGAKRQGLRSDGVAQGGDDGVTGGIGSQERRVGWGRGDDLSGVGQRLEQASEGGAGDVGDRPDTLGLAEGLEAEGAPGGWRTSSPDRLAFPQSGTGGGGESACGGRALETPSNCRKIGPRMQIDMGSSSDSDDA 2391
            SNRDGSAADPR+ SSSKSLRPYDIPYATGN NAAAVN  TTAGT ASAEAGKVPG IDDKGIVLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEK+LGEVYLTVPQYEAFITQGEPELEMEL                                                                                        RG DG                                                                                                                                                      DDAGGRSASHYPENQRCGRDGAVT+AGGT   E +TFGRGNAIGGAGARVPEE+DRETPG  ARVEMRSTQDILSLFGGFGGTPSTQGGHDHGS  R+TAE+QRHGPTEAPLGSQASGDAL  VGGGIRRAADM RAQKE RAAAAT               S  GAPND+AV GDW CGTCGVRGDPSSASCRVCGAKR+GLRSDGVAQGGDDGV GGIGSQE RVGWGRGDD  G G+R E+ASEGGAGDVGDRP TLG+AEGLEA GAPG WRTSSPDR AFPQS  GGGGE ACG   LETPS+C+KIGPRMQ+DMGSSSDSDDA
Sbjct:   26 SNRDGSAADPRKASSSKSLRPYDIPYATGNSNAAAVN--TTAGTAASAEAGKVPGGIDDKGIVLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKLLGEVYLTVPQYEAFITQGEPELEMELLR--------------------------------------------------------------------------------------RGDDG------------------------------------------------------------------------------------------------------------------------------------------------------DDAGGRSASHYPENQRCGRDGAVTAAGGTGGREENTFGRGNAIGGAGARVPEEVDRETPGYVARVEMRSTQDILSLFGGFGGTPSTQGGHDHGSHGRETAETQRHGPTEAPLGSQASGDALRPVGGGIRRAADMHRAQKEARAAAATVXXXXXXXXXXTGASSARGAPNDDAVMGDWVCGTCGVRGDPSSASCRVCGAKREGLRSDGVAQGGDDGVRGGIGSQEGRVGWGRGDDFGGGGRRQEKASEGGAGDVGDRPVTLGIAEGLEAGGAPGRWRTSSPDRPAFPQSRAGGGGEGACGVSVLETPSSCQKIGPRMQMDMGSSSDSDDA 493
[Close]
BLAST of mRNA_Ecto-sp13_S_contig908.20636.1 vs. uniprot
Match: A0A835YK32_9STRA (DUF2439 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK32_9STRA)

HSP 1 Score: 118 bits (295), Expect = 8.960e-24
Identity = 52/82 (63.41%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:  490 VLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWSEALGVTEKILGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQ 735
            VLRC++T+Q TKKRKTW DGAV+CC KR  V+LY+WS+ LGVTEK LGE +L   ++ AF+TQ EPELEME Y+V+L+GV +
Sbjct:   10 VLRCLFTSQLTKKRKTWQDGAVRCCAKRLSVTLYKWSDTLGVTEKTLGESFLNAAEFNAFVTQKEPELEMEKYLVTLEGVTE 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig908.20636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZC9_9PHAE0.000e+075.99RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D8LRG4_ECTSI7.590e-22456.52RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A835YK32_9STRA8.960e-2463.41DUF2439 domain-containing protein n=1 Tax=Tribonem... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig908contigEcto-sp13_S_contig908:9612..13172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2396
Hectar predicted targeting categoryother localisation
Exons4
Cds size2394
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464180.1785157-CDS-Ecto-sp13_S_contig908:9611..101081681464180.1785157-CDS-Ecto-sp13_S_contig908:9611..10108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig908 9612..10108 +
1681464180.1923485-CDS-Ecto-sp13_S_contig908:10585..107921681464180.1923485-CDS-Ecto-sp13_S_contig908:10585..10792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig908 10586..10792 +
1681464180.2104793-CDS-Ecto-sp13_S_contig908:11410..121151681464180.2104793-CDS-Ecto-sp13_S_contig908:11410..12115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig908 11411..12115 +
1681464180.2257433-CDS-Ecto-sp13_S_contig908:12187..131721681464180.2257433-CDS-Ecto-sp13_S_contig908:12187..13172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig908 12188..13172 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig908.20636.1prot_Ecto-sp13_S_contig908.20636.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig908 9612..13172 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig908.20636.1

>prot_Ecto-sp13_S_contig908.20636.1 ID=prot_Ecto-sp13_S_contig908.20636.1|Name=mRNA_Ecto-sp13_S_contig908.20636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=798bp
IVVAASWHLDTQRRSETGSSIDRHTRVLATCEVIGVDISCERPIHDPSTR
ASHFKMARLSDSDFDDRGAAGQRPLPHHHRGWQTRERTAGGSARSPLRES
PASNRDGSAADPREVSSSKSLRPYDIPYATGNGNAAAVNVHTTAGTTASA
EAGKVPGIDDKGIVLRCMYTNQKTKKRKTWSDGAVKCCPKRQRVSLYRWS
EALGVTEKILGEVYLTVPQYEAFITQGEPELEMELYIVSLDGVIQPDDNA
FGGGAGSAATPAENTAATGAFGGGGTTAAAGKKRKLFKAFKPPARREPTP
ATQPEDSWGRLPPGGVGFRGNGDRGGDGRFPSDRGGRQLSPRTTYTGFGH
VESLWDEDEEQEGQDRREDGAGLAGEHGAGWGMGGAAGPAYQNPYDGGNE
SGVLREARSEAAVHPPYHRSTGTSAVGNTNAWMWGPPAGEHSLDGPPQPS
RSTADFASGSPGQQQQQQQDLRRGDDDVDDAGGRSASHYPENQRCGRDGA
VTSAGGTSSTEASTFGRGNAIGGAGARVPEEIDRETPGDGARVEMRSTQD
ILSLFGGFGGTPSTQGGHDHGSQERKTAESQRHGPTEAPLGSQASGDALM
AVGGGIRRAADMRRAQKETRAAAATAVPGGSVAGAPNDEAVTGDWACGTC
GVRGDPSSASCRVCGAKRQGLRSDGVAQGGDDGVTGGIGSQERRVGWGRG
DDLSGVGQRLEQASEGGAGDVGDRPDTLGLAEGLEAEGAPGGWRTSSPDR
LAFPQSGTGGGGESACGGRALETPSNCRKIGPRMQIDMGSSSDSDDA*
back to top

mRNA from alignment at Ecto-sp13_S_contig908:9612..13172+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig908.20636.1 ID=mRNA_Ecto-sp13_S_contig908.20636.1|Name=mRNA_Ecto-sp13_S_contig908.20636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig908:9612..13172+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGTAGTTGCTGCATCGTGGCATCTAGACACACAGCGACGGAGCGAGAC
AGGCAGTTCGATAGACAGACACACACGCGTGTTGGCCACGTGTGAAGTTA
TTGGTGTTGACATCTCCTGCGAACGGCCTATTCACGACCCATCAACCAGA
GCTTCTCATTTCAAAATGGCGAGACTGTCGGATTCGGACTTCGACGACCG
AGGTGCGGCGGGGCAACGGCCTCTTCCTCATCATCACCGAGGATGGCAAA
CACGAGAGCGGACAGCTGGCGGCAGTGCGCGCTCTCCCCTCCGCGAATCT
CCTGCCAGCAACAGAGATGGGTCTGCTGCCGACCCGAGGGAGGTCAGCAG
CTCGAAGAGTCTGCGACCCTACGACATACCTTACGCCACGGGAAACGGCA
ACGCCGCCGCGGTGAATGTGCATACAACGGCGGGCACTACAGCTTCTGCG
GAGGCTGGGAAGGTGCCCGGCATAGACGACAAGGGCATCGTTTTGAGGTG
TGTGGTTTGGGAATGAAATGCAACTTAGACAGAAGCAGTTGATATTTACA
TCTTTACATCAAACCTCGGACATTCCCTCAAGTCTTCGCAGATTGTGCCC
ATGGGCCAATCATTTGTACGAAAAAACTGCTTCTGATGAACGAATCTTAC
ACGCCGATACGAGCACATGCAACAAGTCCGTGTCAGTTGACCAGTACGGA
TTTTAGTAGGTTCGGCGCAGAGGTCGAAAAGCGTTTTTGAATGTGAAGGC
AACCAACAACAACACAAAGACATCAGCCAGCTTGACCTACAGTAATGCAG
ATTGATTTCTTTGCGTTGGGTTGGACTGCGAGCTCGGTTTTCTGTTTAGA
CTTACCGCCGCGAAGTGTTCGGGACACAGGACGTCCTGGATATGTATGGA
TGTGTGGAGACAACAGCCAACCGAGCACGCCGCTTTGTGCCCGACGTGGC
ACTACTGCCTGCCGTATTGCTCAGATGCATGTACACCAACCAGAAGACCA
AAAAACGCAAGACCTGGTCGGACGGCGCCGTCAAGTGCTGCCCGAAACGC
CAACGGGTGTCCCTTTATCGTTGGAGCGAAGCACTGGGCGTCACAGAGAA
GATTCTTGGCGAGGTCTACCTTACCGTGCCACAGTACGAGGCGTTTATCA
CACAAGGGGAGCCGGAACTCGAGATGGAACTGTGAGTGTGACAGAGAGAG
AAATATGCGTTGTTGTTGTTGGTGTTGTTGCGTCGTTGGTGGTGGTGGTG
TAATGGATACAAATCGCTGTTTGGGCGATCGGACGGAGGTATTCGGCTCA
GATACTGCTTGTGTCGGGATTGTTTTCTCCTTCATGTTTTCGTTCATACA
TGTTGCAGCTCTGAGCACCATGAGCTAACCTCGTATACCGAGGAAGTCGC
GCGATTCGCAAAGGGTGTGTCAGACTATGGGTAGCTGCAGACCGTTGAGT
CATTCCTCGCGATAGGTATGTTCCGAATCGTTACAGTCACACTTTCTTCG
TCACCAAGGGCCTACGTCTCAGCCGTGTGTCGTTCCGAAACTGCTCCACT
GCCTGCTTGTGAGGGAACACATGCCATAGACTTTTAGCACATGGAACATA
CGTACGTACGTATCATGGTGGTCAGGTAACAGGCCGGCGGATCCGACAAA
GTTACTCGAGCACCGAAACATTCTCGCTTTACTTTTGCCGAGTGCCACGT
GGAGCTCTCAAACAATTATGACGCGGAGTCCGAACGTGATCGTGTTTTCA
CATCGGGGGCCCGCCGCCTGGTCGCTTCAAATTTCGAAACACAAAACAGA
TACATTGTTTCCTTGGACGGTGTCATACAACCCGATGACAACGCGTTCGG
CGGCGGTGCCGGCTCGGCGGCCACCCCTGCTGAGAACACGGCGGCGACCG
GGGCTTTCGGAGGCGGCGGGACCACCGCCGCTGCCGGCAAAAAGAGGAAA
CTCTTCAAGGCGTTCAAGCCGCCCGCTAGGAGAGAGCCGACCCCCGCTAC
CCAGCCTGAGGATTCTTGGGGCCGGCTGCCGCCGGGGGGGGTGGGTTTCC
GCGGGAACGGTGACAGAGGCGGAGATGGCCGTTTTCCTTCCGACAGAGGA
GGCCGACAATTATCCCCTCGCACAACGTACACCGGATTCGGCCACGTTGA
GTCCTTGTGGGATGAGGACGAAGAACAAGAAGGACAGGACCGCCGTGAGG
ATGGGGCTGGGCTGGCCGGCGAACACGGTGCTGGGTGGGGCATGGGAGGG
GCTGCCGGGCCGGCCTACCAGAATCCATACGATGGCGGTAACGAATCGGG
CGTGCTTCGAGAGGCCCGGTCCGAAGCAGCGGTGCACCCCCCGTACCACC
GGTCGACCGGCACCTCAGCAGTAGGCAACACGAATGCCTGGATGTGGGGG
CCGCCGGCTGGGGAGCACTCGCTCGATGGGCCACCGCAGCCGTCCCGATC
GACCGCTGATTTTGCCAGCGGCTCTCCTGGGCAGCAGCAGCAGCAGCAGC
AGGAGTTACCTAGTCACGACGAGACGGCAGTTTCTGGCCACCACCGAGAC
GACGACCCTTGCTCCTTCCTCGAAAGCCTTCGGAGAGGAGACGACGACGT
CGACGACGCGGGAGGACGGAGCGCGAGCCATTACCCCGAGAATCAACGAT
GCGGTCGCGACGGCGCCGTGACATCGGCTGGAGGCACTAGTAGCACGGAA
GCAAGCACGTTCGGGCGTGGCAACGCTATCGGTGGTGCTGGCGCCCGCGT
CCCCGAGGAGATCGATCGCGAAACACCCGGCGATGGTGCTAGGGTGGAGA
TGCGCTCCACCCAGGACATCCTCTCCCTGTTCGGCGGCTTCGGAGGGACG
CCATCTACCCAAGGAGGGCACGATCACGGCTCACAGGAACGAAAGACAGC
CGAGAGTCAACGGCACGGGCCAACTGAAGCCCCTCTCGGATCGCAAGCAT
CCGGGGATGCTCTCATGGCGGTCGGGGGCGGCATTCGCCGGGCGGCGGAC
ATGCGCCGGGCGCAGAAAGAGACCCGGGCAGCGGCGGCGACGGCGGTGCC
TGGAGGAAGTGTAGCTGGCGCGCCCAATGACGAGGCGGTTACGGGGGACT
GGGCTTGCGGAACGTGCGGGGTGCGCGGAGACCCTTCGTCTGCGTCTTGC
CGTGTCTGCGGAGCTAAGCGACAAGGGCTTCGGAGTGATGGCGTCGCCCA
GGGCGGTGACGATGGTGTTACGGGCGGCATCGGCAGCCAGGAACGACGGG
TGGGGTGGGGTCGCGGGGATGACTTAAGCGGAGTTGGACAGCGGCTAGAG
CAGGCTTCGGAAGGCGGAGCAGGGGACGTGGGCGATCGACCTGATACTCT
TGGCCTCGCAGAAGGCTTAGAGGCAGAAGGTGCCCCTGGTGGGTGGCGCA
CTAGTTCTCCGGACCGCCTTGCTTTCCCCCAGTCAGGAACCGGGGGTGGC
GGGGAGAGTGCTTGTGGGGGTCGTGCGCTTGAGACTCCGAGCAACTGCCG
GAAGATCGGTCCTCGAATGCAGATAGACATGGGTTCTTCGTCGGATAGCG
ATGATGCTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig908:9612..13172+

>mRNA_Ecto-sp13_S_contig908.20636.1 ID=mRNA_Ecto-sp13_S_contig908.20636.1|Name=mRNA_Ecto-sp13_S_contig908.20636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2394bp|location=Sequence derived from alignment at Ecto-sp13_S_contig908:9612..13172+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGTAGTTGCTGCATCGTGGCATCTAGACACACAGCGACGGAGCGAGAC
AGGCAGTTCGATAGACAGACACACACGCGTGTTGGCCACGTGTGAAGTTA
TTGGTGTTGACATCTCCTGCGAACGGCCTATTCACGACCCATCAACCAGA
GCTTCTCATTTCAAAATGGCGAGACTGTCGGATTCGGACTTCGACGACCG
AGGTGCGGCGGGGCAACGGCCTCTTCCTCATCATCACCGAGGATGGCAAA
CACGAGAGCGGACAGCTGGCGGCAGTGCGCGCTCTCCCCTCCGCGAATCT
CCTGCCAGCAACAGAGATGGGTCTGCTGCCGACCCGAGGGAGGTCAGCAG
CTCGAAGAGTCTGCGACCCTACGACATACCTTACGCCACGGGAAACGGCA
ACGCCGCCGCGGTGAATGTGCATACAACGGCGGGCACTACAGCTTCTGCG
GAGGCTGGGAAGGTGCCCGGCATAGACGACAAGGGCATCGTTTTGAGATG
CATGTACACCAACCAGAAGACCAAAAAACGCAAGACCTGGTCGGACGGCG
CCGTCAAGTGCTGCCCGAAACGCCAACGGGTGTCCCTTTATCGTTGGAGC
GAAGCACTGGGCGTCACAGAGAAGATTCTTGGCGAGGTCTACCTTACCGT
GCCACAGTACGAGGCGTTTATCACACAAGGGGAGCCGGAACTCGAGATGG
AACTATACATTGTTTCCTTGGACGGTGTCATACAACCCGATGACAACGCG
TTCGGCGGCGGTGCCGGCTCGGCGGCCACCCCTGCTGAGAACACGGCGGC
GACCGGGGCTTTCGGAGGCGGCGGGACCACCGCCGCTGCCGGCAAAAAGA
GGAAACTCTTCAAGGCGTTCAAGCCGCCCGCTAGGAGAGAGCCGACCCCC
GCTACCCAGCCTGAGGATTCTTGGGGCCGGCTGCCGCCGGGGGGGGTGGG
TTTCCGCGGGAACGGTGACAGAGGCGGAGATGGCCGTTTTCCTTCCGACA
GAGGAGGCCGACAATTATCCCCTCGCACAACGTACACCGGATTCGGCCAC
GTTGAGTCCTTGTGGGATGAGGACGAAGAACAAGAAGGACAGGACCGCCG
TGAGGATGGGGCTGGGCTGGCCGGCGAACACGGTGCTGGGTGGGGCATGG
GAGGGGCTGCCGGGCCGGCCTACCAGAATCCATACGATGGCGGTAACGAA
TCGGGCGTGCTTCGAGAGGCCCGGTCCGAAGCAGCGGTGCACCCCCCGTA
CCACCGGTCGACCGGCACCTCAGCAGTAGGCAACACGAATGCCTGGATGT
GGGGGCCGCCGGCTGGGGAGCACTCGCTCGATGGGCCACCGCAGCCGTCC
CGATCGACCGCTGATTTTGCCAGCGGCTCTCCTGGGCAGCAGCAGCAGCA
GCAGCAGGACCTTCGGAGAGGAGACGACGACGTCGACGACGCGGGAGGAC
GGAGCGCGAGCCATTACCCCGAGAATCAACGATGCGGTCGCGACGGCGCC
GTGACATCGGCTGGAGGCACTAGTAGCACGGAAGCAAGCACGTTCGGGCG
TGGCAACGCTATCGGTGGTGCTGGCGCCCGCGTCCCCGAGGAGATCGATC
GCGAAACACCCGGCGATGGTGCTAGGGTGGAGATGCGCTCCACCCAGGAC
ATCCTCTCCCTGTTCGGCGGCTTCGGAGGGACGCCATCTACCCAAGGAGG
GCACGATCACGGCTCACAGGAACGAAAGACAGCCGAGAGTCAACGGCACG
GGCCAACTGAAGCCCCTCTCGGATCGCAAGCATCCGGGGATGCTCTCATG
GCGGTCGGGGGCGGCATTCGCCGGGCGGCGGACATGCGCCGGGCGCAGAA
AGAGACCCGGGCAGCGGCGGCGACGGCGGTGCCTGGAGGAAGTGTAGCTG
GCGCGCCCAATGACGAGGCGGTTACGGGGGACTGGGCTTGCGGAACGTGC
GGGGTGCGCGGAGACCCTTCGTCTGCGTCTTGCCGTGTCTGCGGAGCTAA
GCGACAAGGGCTTCGGAGTGATGGCGTCGCCCAGGGCGGTGACGATGGTG
TTACGGGCGGCATCGGCAGCCAGGAACGACGGGTGGGGTGGGGTCGCGGG
GATGACTTAAGCGGAGTTGGACAGCGGCTAGAGCAGGCTTCGGAAGGCGG
AGCAGGGGACGTGGGCGATCGACCTGATACTCTTGGCCTCGCAGAAGGCT
TAGAGGCAGAAGGTGCCCCTGGTGGGTGGCGCACTAGTTCTCCGGACCGC
CTTGCTTTCCCCCAGTCAGGAACCGGGGGTGGCGGGGAGAGTGCTTGTGG
GGGTCGTGCGCTTGAGACTCCGAGCAACTGCCGGAAGATCGGTCCTCGAA
TGCAGATAGACATGGGTTCTTCGTCGGATAGCGATGATGCTTGA
back to top