prot_Ecto-sp13_S_contig906.20617.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig906.20617.1
Unique Nameprot_Ecto-sp13_S_contig906.20617.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length242
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig906.20617.1 vs. uniprot
Match: A0A6H5JKQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ5_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 2.560e-139
Identity = 202/213 (94.84%), Postives = 206/213 (96.71%), Query Frame = 0 
Query:   26 IFDVSPAALGAVISDVATSATPLYLGGDFTATWSYASDDGEPTTTGDLRVYEISLEPCVAAGECECDSDGNSLAISLCDDAATTTTLGCVDSDGSYDLTVPSTAEPGVYLVRVSLKEDPSAVFACTYGFSVEQEEE-VEPDLSVTSSSGDDGSWIEVFEVASVAPGEAVTAKWLYRDGSEGDDEDDGEGAVGSAGSFAVDLYSCDGEACANGR 237
            IFDVSPAALGAVISDVATSATPLYLGGDFTATWSYASDDGEPTTTGDLRVYEISLEPC AAGECECDS+GN LAISLCDDA TTTT GCVDSDGSYDLTVPSTAEPGVYLVRVSLK+DPSAVFACT+GFSVEQEEE VEPDLSVTSSSGD GSWIEVFEVASVAPGEAVTAKWLYRDGSEGDDEDDGEGAVGS GSFAVDL+SCDGEACANGR
Sbjct:    6 IFDVSPAALGAVISDVATSATPLYLGGDFTATWSYASDDGEPTTTGDLRVYEISLEPCAAAGECECDSEGNPLAISLCDDAGTTTTFGCVDSDGSYDLTVPSTAEPGVYLVRVSLKDDPSAVFACTFGFSVEQEEEEVEPDLSVTSSSGDHGSWIEVFEVASVAPGEAVTAKWLYRDGSEGDDEDDGEGAVGSPGSFAVDLHSCDGEACANGR 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig906.20617.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 9.120e-5
Identity = 28/82 (34.15%), Postives = 45/82 (54.88%), Query Frame = 0 
Query:   75 VYEISLEPCVAAGECECDSDGNSLAISLCDDAATTTTLGCVDSDGSYDLTVPSTAEPGVYLVRVSLKEDPSAVFACTYGFSV 156
            V   S++  ++ G  +C +       S+CD ++    +GC DS G YD+ +PS  E G+Y +RV + EDP  VF C+  F +
Sbjct:  170 VNRFSIDLYMSGGSGDCGT----YVTSICDKSS----IGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPD-VFGCSDSFEI 242
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig906.20617.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKQ5_9PHAE2.560e-13994.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP11_9PHAE9.120e-534.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..35
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..242
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.721

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig906contigEcto-sp13_S_contig906:12354..13079 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig906.20617.1mRNA_Ecto-sp13_S_contig906.20617.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig906 12354..13079 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig906.20617.1 ID=prot_Ecto-sp13_S_contig906.20617.1|Name=mRNA_Ecto-sp13_S_contig906.20617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MPRGGCSWRRQSASLLLLLWSLLGPIFDVSPAALGAVISDVATSATPLYL
GGDFTATWSYASDDGEPTTTGDLRVYEISLEPCVAAGECECDSDGNSLAI
SLCDDAATTTTLGCVDSDGSYDLTVPSTAEPGVYLVRVSLKEDPSAVFAC
TYGFSVEQEEEVEPDLSVTSSSGDDGSWIEVFEVASVAPGEAVTAKWLYR
DGSEGDDEDDGEGAVGSAGSFAVDLYSCDGEACANGRQESTR
back to top