mRNA_Ecto-sp13_S_contig906.20617.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig906.20617.1
Unique NamemRNA_Ecto-sp13_S_contig906.20617.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig906.20617.1 vs. uniprot
Match: A0A6H5JKQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ5_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 2.560e-139
Identity = 202/213 (94.84%), Postives = 206/213 (96.71%), Query Frame = 1 
Query:   76 IFDVSPAALGAVISDVATSATPLYLGGDFTATWSYASDDGEPTTTGDLRVYEISLEPCVAAGECECDSDGNSLAISLCDDAATTTTLGCVDSDGSYDLTVPSTAEPGVYLVRVSLKEDPSAVFACTYGFSVEQEEE-VEPDLSVTSSSGDDGSWIEVFEVASVAPGEAVTAKWLYRDGSEGDDEDDGEGAVGSAGSFAVDLYSCDGEACANGR 711
            IFDVSPAALGAVISDVATSATPLYLGGDFTATWSYASDDGEPTTTGDLRVYEISLEPC AAGECECDS+GN LAISLCDDA TTTT GCVDSDGSYDLTVPSTAEPGVYLVRVSLK+DPSAVFACT+GFSVEQEEE VEPDLSVTSSSGD GSWIEVFEVASVAPGEAVTAKWLYRDGSEGDDEDDGEGAVGS GSFAVDL+SCDGEACANGR
Sbjct:    6 IFDVSPAALGAVISDVATSATPLYLGGDFTATWSYASDDGEPTTTGDLRVYEISLEPCAAAGECECDSEGNPLAISLCDDAGTTTTFGCVDSDGSYDLTVPSTAEPGVYLVRVSLKDDPSAVFACTFGFSVEQEEEEVEPDLSVTSSSGDHGSWIEVFEVASVAPGEAVTAKWLYRDGSEGDDEDDGEGAVGSPGSFAVDLHSCDGEACANGR 218
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BLAST of mRNA_Ecto-sp13_S_contig906.20617.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 9.120e-5
Identity = 28/82 (34.15%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:  223 VYEISLEPCVAAGECECDSDGNSLAISLCDDAATTTTLGCVDSDGSYDLTVPSTAEPGVYLVRVSLKEDPSAVFACTYGFSV 468
            V   S++  ++ G  +C +       S+CD ++    +GC DS G YD+ +PS  E G+Y +RV + EDP  VF C+  F +
Sbjct:  170 VNRFSIDLYMSGGSGDCGT----YVTSICDKSS----IGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPD-VFGCSDSFEI 242
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig906.20617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKQ5_9PHAE2.560e-13994.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP11_9PHAE9.120e-534.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig906contigEcto-sp13_S_contig906:12354..13079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size727
Hectar predicted targeting categorysignal peptide
Exons1
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464178.809269-CDS-Ecto-sp13_S_contig906:12353..130791681464178.809269-CDS-Ecto-sp13_S_contig906:12353..13079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig906 12354..13079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig906.20617.1prot_Ecto-sp13_S_contig906.20617.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig906 12354..13079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig906.20617.1

>prot_Ecto-sp13_S_contig906.20617.1 ID=prot_Ecto-sp13_S_contig906.20617.1|Name=mRNA_Ecto-sp13_S_contig906.20617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MPRGGCSWRRQSASLLLLLWSLLGPIFDVSPAALGAVISDVATSATPLYL
GGDFTATWSYASDDGEPTTTGDLRVYEISLEPCVAAGECECDSDGNSLAI
SLCDDAATTTTLGCVDSDGSYDLTVPSTAEPGVYLVRVSLKEDPSAVFAC
TYGFSVEQEEEVEPDLSVTSSSGDDGSWIEVFEVASVAPGEAVTAKWLYR
DGSEGDDEDDGEGAVGSAGSFAVDLYSCDGEACANGRQESTR
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mRNA from alignment at Ecto-sp13_S_contig906:12354..13079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig906.20617.1 ID=mRNA_Ecto-sp13_S_contig906.20617.1|Name=mRNA_Ecto-sp13_S_contig906.20617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig906:12354..13079+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCGAGGAGGATGCTCGTGGCGGCGGCAATCAGCATCACTGCTGCT
GTTGTTGTGGTCCCTGCTGGGACCTATTTTTGACGTATCACCCGCCGCTC
TTGGGGCAGTCATCTCAGACGTCGCGACGAGCGCCACCCCGCTCTACCTG
GGCGGAGACTTCACCGCCACCTGGTCGTACGCGAGCGACGATGGCGAGCC
GACCACCACGGGCGACCTGCGGGTGTACGAGATTTCGCTGGAGCCCTGCG
TCGCCGCGGGAGAATGCGAGTGCGACAGCGACGGCAATTCTCTGGCCATT
TCATTGTGCGACGACGCTGCTACTACTACTACGCTCGGGTGCGTAGACAG
CGACGGCAGCTACGACCTGACGGTGCCCTCGACGGCGGAGCCGGGTGTGT
ACCTTGTGAGGGTGAGCCTCAAGGAAGACCCCAGCGCCGTGTTCGCGTGC
ACCTACGGCTTCAGCGTGGAGCAGGAGGAGGAGGTGGAGCCCGACCTTTC
GGTTACATCATCATCGGGTGATGATGGTTCATGGATTGAGGTCTTCGAGG
TTGCTAGCGTTGCTCCGGGGGAAGCGGTCACGGCGAAGTGGCTCTACCGC
GACGGTTCGGAGGGGGACGACGAGGACGATGGGGAAGGTGCCGTTGGCTC
TGCTGGGAGCTTCGCGGTGGACCTCTACTCGTGCGATGGCGAAGCTTGCG
CTAACGGCAGGCAAGAAAGCACGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig906:12354..13079+

>mRNA_Ecto-sp13_S_contig906.20617.1 ID=mRNA_Ecto-sp13_S_contig906.20617.1|Name=mRNA_Ecto-sp13_S_contig906.20617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig906:12354..13079+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCGAGGAGGATGCTCGTGGCGGCGGCAATCAGCATCACTGCTGCT
GTTGTTGTGGTCCCTGCTGGGACCTATTTTTGACGTATCACCCGCCGCTC
TTGGGGCAGTCATCTCAGACGTCGCGACGAGCGCCACCCCGCTCTACCTG
GGCGGAGACTTCACCGCCACCTGGTCGTACGCGAGCGACGATGGCGAGCC
GACCACCACGGGCGACCTGCGGGTGTACGAGATTTCGCTGGAGCCCTGCG
TCGCCGCGGGAGAATGCGAGTGCGACAGCGACGGCAATTCTCTGGCCATT
TCATTGTGCGACGACGCTGCTACTACTACTACGCTCGGGTGCGTAGACAG
CGACGGCAGCTACGACCTGACGGTGCCCTCGACGGCGGAGCCGGGTGTGT
ACCTTGTGAGGGTGAGCCTCAAGGAAGACCCCAGCGCCGTGTTCGCGTGC
ACCTACGGCTTCAGCGTGGAGCAGGAGGAGGAGGTGGAGCCCGACCTTTC
GGTTACATCATCATCGGGTGATGATGGTTCATGGATTGAGGTCTTCGAGG
TTGCTAGCGTTGCTCCGGGGGAAGCGGTCACGGCGAAGTGGCTCTACCGC
GACGGTTCGGAGGGGGACGACGAGGACGATGGGGAAGGTGCCGTTGGCTC
TGCTGGGAGCTTCGCGGTGGACCTCTACTCGTGCGATGGCGAAGCTTGCG
CTAACGGCAGGCAAGAAAGCACGAGG
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