prot_Ecto-sp13_S_contig8975.20513.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8975.20513.1
Unique Nameprot_Ecto-sp13_S_contig8975.20513.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length113
Homology
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: D7G2G1_ECTSI (RuBisCo_chap_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G1_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 6.030e-64
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0
Query:    1 MRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDERT 98
            MRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVF MKEPVAIVCPNDDLNIQMPNDE+T
Sbjct:   59 MRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKT 156          
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A6H5JHR7_9PHAE (RuBisCo_chap_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR7_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.100e-62
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0
Query:    1 MRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDERTRGL 101
            MRSRFLPVDQMDDEVFAPRIVQVAG LPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDE+   L
Sbjct:   64 MRSRFLPVDQMDDEVFAPRIVQVAGVLPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDEKAEML 164          
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: D7G2G3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G3_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.650e-46
Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 0
Query:   19 RIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDERT 98
            R+ QVAGALPEITVA IMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVF MKEPVAIVCPNDDLNIQMPNDE+T
Sbjct:    6 RMEQVAGALPEITVAYIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKT 85          
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A7S4HS41_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HS41_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.350e-24
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 0
Query:    3 SRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMP 93
            S FLP+ Q+D + +APRIVQ+AGA P IT  D  AV   P+P  G W YDFSDP+GPQ+GTVAVPG  +V    +P  I+  +  + +++P
Sbjct:   64 SCFLPLTQLDQDYYAPRIVQIAGAYPGITAEDFFAVTSEPSPPQGQWSYDFSDPDGPQIGTVAVPGSNKVAACGDPCVIIAEHPSIGVELP 154          
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A7S3LGB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGB5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.670e-24
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 0
Query:    5 FLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMP 93
            FLP+ Q++ + FAPRIVQ+AG  P ++ AD MAV    AP+ G W YDFSDP+GPQLGTVA+ G + V   ++PV I+  +  + I++P
Sbjct:   57 FLPIKQLEQDYFAPRIVQIAGGYPGLSKADFMAVTSEQAPDQGQWTYDFSDPDGPQLGTVALEGSQIVHDCEDPVVIIAEHPSIGIELP 145          
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A7S2YFZ8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YFZ8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.890e-23
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 0
Query:    5 FLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMP 93
            F+P+ Q+D + + PRIVQ+AGA P +T  + M+V   P+PE G W YDFSDP+GPQLGTVA+PG E V   ++PV I+  +  + + +P
Sbjct:   46 FMPLKQLDQDHYNPRIVQIAGAYPGLTKEEYMSVTSEPSPERGQWTYDFSDPDGPQLGTVALPGSEIVHFAEDPVVIIAEHPSVGVDLP 134          
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A836C9L5_9STRA (RuBisCo_chap_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L5_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 9.200e-23
Identity = 49/99 (49.49%), Postives = 61/99 (61.62%), Query Frame = 0
Query:    3 SRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDERTRGL 101
            SRFLP+ Q+      PR V +AGA P +T  DI A       E G WQYDF+DPEGPQ+GTVA+PGG+ V  + +PV IV  +D L I +P D  T  L
Sbjct:   59 SRFLPIVQIGAREHYPRTVCIAGAYPGLTAEDIAAPTSGEPAEQGTWQYDFTDPEGPQMGTVALPGGDTVTDLIDPVIIVAASDSLGISLPQDATTEVL 157          
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A7S2FVK7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVK7_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.300e-22
Identity = 46/93 (49.46%), Postives = 62/93 (66.67%), Query Frame = 0
Query:    3 SRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPND 95
            S+F+P+ Q+D E +APR VQVAG LP +T  +  A    PA   G WQ+DFSDPEGPQ+GT+A PG   V   ++PVAIV  +  L+I + N+
Sbjct:   57 SKFMPLTQLDSEEYAPRTVQVAGVLPGLTKEEFYAPQSAPAAPPGQWQFDFSDPEGPQMGTIAFPGSANVQACEDPVAIVTNSAHLHISLANN 149          
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: B7FTB2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FTB2_PHATC)

HSP 1 Score: 95.1 bits (235), Expect = 3.870e-22
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 0
Query:    3 SRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPND 95
            S FLP+ Q+D + +APRIVQ+AGA P +T  +   V    A E+G W YDFSDPEGPQ+GTVA+ G E V    +PVAI+  +  + + +P +
Sbjct:   24 SCFLPLRQLDQDYYAPRIVQIAGAYPGLTKEEFYGVQSEEAAEVGQWSYDFSDPEGPQVGTVAMDGSELVSFCPDPVAIIAEHSSVGVDLPKE 116          
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: B8BVP4_THAPS (RuBisCo_chap_C domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVP4_THAPS)

HSP 1 Score: 95.9 bits (237), Expect = 5.050e-22
Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 0
Query:    3 SRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQM 92
            S FLP+ Q DDE  APR+VQ+AGA P +T  + +AV   P  E+G W YDF+DP GPQ+GTVA+PG   V++  +PV I+  +  L + +
Sbjct:   68 SCFLPLLQNDDEYIAPRVVQIAGAYPGVTAEEFLAVTSEPPAELGQWAYDFTDPNGPQMGTVALPGMTSVYETDDPVVIIAEHPTLGVTL 157          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G2G1_ECTSI6.030e-6497.96RuBisCo_chap_C domain-containing protein n=1 Tax=E... [more]
A0A6H5JHR7_9PHAE1.100e-6295.05RuBisCo_chap_C domain-containing protein n=1 Tax=E... [more]
D7G2G3_ECTSI1.650e-4693.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4HS41_9STRA1.350e-2449.45Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3LGB5_9STRA1.670e-2449.44Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S2YFZ8_9STRA3.890e-2348.31Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A836C9L5_9STRA9.200e-2349.49RuBisCo_chap_C domain-containing protein n=1 Tax=T... [more]
A0A7S2FVK7_9STRA1.300e-2249.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B7FTB2_PHATC3.870e-2247.31Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
B8BVP4_THAPS5.050e-2247.78RuBisCo_chap_C domain-containing protein n=1 Tax=T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040858Rubisco accumulation factor 1, C-terminalPFAMPF18087RuBisCo_chap_Ccoord: 6..95
e-value: 1.9E-6
score: 27.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8975contigEcto-sp13_S_contig8975:1293..2578 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8975.20513.1mRNA_Ecto-sp13_S_contig8975.20513.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8975 1265..6458 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8975.20513.1 ID=prot_Ecto-sp13_S_contig8975.20513.1|Name=mRNA_Ecto-sp13_S_contig8975.20513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQ
YDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDERTRG
LWRTTKLTGPDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040858Raf1_C