mRNA_Ecto-sp13_S_contig8975.20513.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: D7G2G1_ECTSI (RuBisCo_chap_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G1_ECTSI) HSP 1 Score: 215 bits (548), Expect = 3.480e-69 Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 2
Query: 2 AAPSEGAHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDERT 322
AAP EG+HGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVF MKEPVAIVCPNDDLNIQMPNDE+T
Sbjct: 50 AAPLEGSHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKT 156
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A6H5JHR7_9PHAE (RuBisCo_chap_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR7_9PHAE) HSP 1 Score: 216 bits (549), Expect = 2.310e-68 Identity = 104/110 (94.55%), Postives = 105/110 (95.45%), Query Frame = 2
Query: 2 AAPSEGAHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDERTRGL 331
AAP EGAHGMRSRFLPVDQMDDEVFAPRIVQVAG LPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDE+ L
Sbjct: 55 AAPLEGAHGMRSRFLPVDQMDDEVFAPRIVQVAGVLPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDEKAEML 164
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: D7G2G3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G3_ECTSI) HSP 1 Score: 156 bits (395), Expect = 1.080e-45 Identity = 75/80 (93.75%), Postives = 77/80 (96.25%), Query Frame = 2
Query: 83 RIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDERT 322
R+ QVAGALPEITVA IMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVF MKEPVAIVCPNDDLNIQMPNDE+T
Sbjct: 6 RMEQVAGALPEITVAYIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFNMKEPVAIVCPNDDLNIQMPNDEKT 85
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A7S3LGB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGB5_9STRA) HSP 1 Score: 105 bits (261), Expect = 7.180e-26 Identity = 48/101 (47.52%), Postives = 67/101 (66.34%), Query Frame = 2
Query: 5 APSEGAHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMP 307
A S HG + FLP+ Q++ + FAPRIVQ+AG P ++ AD MAV AP+ G W YDFSDP+GPQLGTVA+ G + V ++PV I+ + + I++P
Sbjct: 45 AGSARKHGQDACFLPIKQLEQDYFAPRIVQIAGGYPGLSKADFMAVTSEQAPDQGQWTYDFSDPDGPQLGTVALEGSQIVHDCEDPVVIIAEHPSIGIELP 145
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A7S4HS41_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HS41_9STRA) HSP 1 Score: 107 bits (267), Expect = 8.830e-26 Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2
Query: 2 AAPSEGAHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMP 307
AA HG S FLP+ Q+D + +APRIVQ+AGA P IT D AV P+P G W YDFSDP+GPQ+GTVAVPG +V +P I+ + + +++P
Sbjct: 53 AASGGTMHGDSSCFLPLTQLDQDYYAPRIVQIAGAYPGITAEDFFAVTSEPSPPQGQWSYDFSDPDGPQIGTVAVPGSNKVAACGDPCVIIAEHPSIGVELP 154
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A7S2FVK7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVK7_9STRA) HSP 1 Score: 105 bits (261), Expect = 5.360e-25 Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 2
Query: 8 PSEGAHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPND 313
P G HG S+F+P+ Q+D E +APR VQVAG LP +T + A PA G WQ+DFSDPEGPQ+GT+A PG V ++PVAIV + L+I + N+
Sbjct: 48 PPMGQHGTGSKFMPLTQLDSEEYAPRTVQVAGVLPGLTKEEFYAPQSAPAAPPGQWQFDFSDPEGPQMGTIAFPGSANVQACEDPVAIVTNSAHLHISLANN 149
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A836C9L5_9STRA (RuBisCo_chap_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L5_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.500e-24 Identity = 52/105 (49.52%), Postives = 64/105 (60.95%), Query Frame = 2
Query: 17 GAHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPNDERTRGL 331
G HG SRFLP+ Q+ PR V +AGA P +T DI A E G WQYDF+DPEGPQ+GTVA+PGG+ V + +PV IV +D L I +P D T L
Sbjct: 53 GLHGTGSRFLPIVQIGAREHYPRTVCIAGAYPGLTAEDIAAPTSGEPAEQGTWQYDFTDPEGPQMGTVALPGGDTVTDLIDPVIIVAASDSLGISLPQDATTEVL 157
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A7S2YFZ8_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YFZ8_9STRA) HSP 1 Score: 102 bits (253), Expect = 6.910e-24 Identity = 45/95 (47.37%), Postives = 65/95 (68.42%), Query Frame = 2
Query: 23 HGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMP 307
HG + F+P+ Q+D + + PRIVQ+AGA P +T + M+V P+PE G W YDFSDP+GPQLGTVA+PG E V ++PV I+ + + + +P
Sbjct: 40 HGEGACFMPLKQLDQDHYNPRIVQIAGAYPGLTKEEYMSVTSEPSPERGQWTYDFSDPDGPQLGTVALPGSEIVHFAEDPVVIIAEHPSVGVDLP 134
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: B7FTB2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FTB2_PHATC) HSP 1 Score: 100 bits (250), Expect = 1.210e-23 Identity = 46/97 (47.42%), Postives = 63/97 (64.95%), Query Frame = 2
Query: 23 HGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPND 313
HG S FLP+ Q+D + +APRIVQ+AGA P +T + V A E+G W YDFSDPEGPQ+GTVA+ G E V +PVAI+ + + + +P +
Sbjct: 20 HGQNSCFLPLRQLDQDYYAPRIVQIAGAYPGLTKEEFYGVQSEEAAEVGQWSYDFSDPEGPQVGTVAMDGSELVSFCPDPVAIIAEHSSVGVDLPKE 116
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Match: A0A7S2RK67_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RK67_9STRA) HSP 1 Score: 102 bits (253), Expect = 1.570e-23 Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 2
Query: 17 GAHGMRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQYDFSDPEGPQLGTVAVPGGEQVFKMKEPVAIVCPNDDLNIQMPND 313
G HG SRF+P+ Q+ + APR V VAG P ITV+++MA +PAP +G W +DF+DPEGPQLGTVA+P V ++PV +V ++ L + + ND
Sbjct: 81 GLHGTGSRFIPLVQLGADEVAPRTVPVAGMYPGITVSELMAPESSPAPNLGTWHFDFTDPEGPQLGTVALPAANSVHLAEDPVVLVSKSEVLGLNLSND 179 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8975.20513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8975.20513.1 >prot_Ecto-sp13_S_contig8975.20513.1 ID=prot_Ecto-sp13_S_contig8975.20513.1|Name=mRNA_Ecto-sp13_S_contig8975.20513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp MRSRFLPVDQMDDEVFAPRIVQVAGALPEITVADIMAVGFTPAPEMGMWQback to top mRNA from alignment at Ecto-sp13_S_contig8975:1265..6458+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8975.20513.1 ID=mRNA_Ecto-sp13_S_contig8975.20513.1|Name=mRNA_Ecto-sp13_S_contig8975.20513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5194bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8975:1265..6458+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8975:1265..6458+ >mRNA_Ecto-sp13_S_contig8975.20513.1 ID=mRNA_Ecto-sp13_S_contig8975.20513.1|Name=mRNA_Ecto-sp13_S_contig8975.20513.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8975:1265..6458+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |