prot_Ecto-sp13_S_contig8953.20486.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8953.20486.1
Unique Nameprot_Ecto-sp13_S_contig8953.20486.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length139
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8953.20486.1 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 1.720e-57
Identity = 109/122 (89.34%), Postives = 112/122 (91.80%), Query Frame = 0 
Query:   18 MATPRGLLFLLGAALFFATHGLRLVGSFTLHFPVFRRTSLLSGAARVSCRRPFPSAPAARCQCFANAESTQTGTIGGREQKHRNRAGKGSLSTPTAPSFSKAQDEAGSKDAERKAAGPEPSW 139
            MATPRGLLFLLGA L FATHGLR V SFTLHFPVFRRTSLLSGA RVS RRPFPSAPA+RC+CFANAESTQTGTIGGREQK  + AGKGSLSTPT PSFSKAQDEAGSKDAERKAAGPEPSW
Sbjct:    1 MATPRGLLFLLGATLLFATHGLRPVESFTLHFPVFRRTSLLSGATRVS-RRPFPSAPASRCRCFANAESTQTGTIGGREQKQGDPAGKGSLSTPTTPSFSKAQDEAGSKDAERKAAGPEPSW 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8953.20486.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNK0_ECTSI1.720e-5789.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 24..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..23
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 48..139
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8953contigEcto-sp13_S_contig8953:3613..4454 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8953.20486.1mRNA_Ecto-sp13_S_contig8953.20486.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8953 3613..4454 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8953.20486.1 ID=prot_Ecto-sp13_S_contig8953.20486.1|Name=mRNA_Ecto-sp13_S_contig8953.20486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
CAHRGCFYLADGGQHHLMATPRGLLFLLGAALFFATHGLRLVGSFTLHFP
VFRRTSLLSGAARVSCRRPFPSAPAARCQCFANAESTQTGTIGGREQKHR
NRAGKGSLSTPTAPSFSKAQDEAGSKDAERKAAGPEPSW
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