mRNA_Ecto-sp13_S_contig8953.20486.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8953.20486.1
Unique NamemRNA_Ecto-sp13_S_contig8953.20486.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8953.20486.1 vs. uniprot
Match: D7FNK0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK0_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 1.720e-57
Identity = 109/122 (89.34%), Postives = 112/122 (91.80%), Query Frame = 1 
Query:   52 MATPRGLLFLLGAALFFATHGLRLVGSFTLHFPVFRRTSLLSGAARVSCRRPFPSAPAARCQCFANAESTQTGTIGGREQKHRNRAGKGSLSTPTAPSFSKAQDEAGSKDAERKAAGPEPSW 417
            MATPRGLLFLLGA L FATHGLR V SFTLHFPVFRRTSLLSGA RVS RRPFPSAPA+RC+CFANAESTQTGTIGGREQK  + AGKGSLSTPT PSFSKAQDEAGSKDAERKAAGPEPSW
Sbjct:    1 MATPRGLLFLLGATLLFATHGLRPVESFTLHFPVFRRTSLLSGATRVS-RRPFPSAPASRCRCFANAESTQTGTIGGREQKQGDPAGKGSLSTPTTPSFSKAQDEAGSKDAERKAAGPEPSW 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8953.20486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNK0_ECTSI1.720e-5789.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8953contigEcto-sp13_S_contig8953:3613..4454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score205.3
Seed ortholog evalue1.9e-50
Seed eggNOG ortholog2880.D7FNK0
Model size419
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size417
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464168.0565348-CDS-Ecto-sp13_S_contig8953:3612..36471681464168.0565348-CDS-Ecto-sp13_S_contig8953:3612..3647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8953 3613..3647 -
1681464168.0717835-CDS-Ecto-sp13_S_contig8953:4072..44541681464168.0717835-CDS-Ecto-sp13_S_contig8953:4072..4454Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8953 4073..4454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8953.20486.1prot_Ecto-sp13_S_contig8953.20486.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8953 3613..4454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8953.20486.1

>prot_Ecto-sp13_S_contig8953.20486.1 ID=prot_Ecto-sp13_S_contig8953.20486.1|Name=mRNA_Ecto-sp13_S_contig8953.20486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
CAHRGCFYLADGGQHHLMATPRGLLFLLGAALFFATHGLRLVGSFTLHFP
VFRRTSLLSGAARVSCRRPFPSAPAARCQCFANAESTQTGTIGGREQKHR
NRAGKGSLSTPTAPSFSKAQDEAGSKDAERKAAGPEPSW
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mRNA from alignment at Ecto-sp13_S_contig8953:3613..4454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8953.20486.1 ID=mRNA_Ecto-sp13_S_contig8953.20486.1|Name=mRNA_Ecto-sp13_S_contig8953.20486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=842bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8953:3613..4454- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTGCGCATCGTGGCTGTTTTTATCTCGCTGATGGAGGACAGCACCACCT
GATGGCGACTCCGCGGGGCCTACTCTTCCTGCTGGGCGCAGCGTTATTCT
TCGCGACGCATGGGTTAAGACTTGTCGGGTCATTCACGTTGCATTTTCCC
GTGTTCAGGAGAACGTCGCTGTTGAGCGGGGCCGCGAGAGTATCATGTCG
TCGTCCATTTCCATCTGCACCGGCGGCGCGTTGCCAATGTTTTGCTAATG
CTGAGTCTACCCAAACCGGCACGATCGGCGGAAGGGAGCAGAAACACAGA
AATCGTGCGGGAAAAGGGTCGTTGTCCACGCCGACTGCGCCATCATTTTC
GAAAGCACAAGATGAAGCTGGGTCGAAGGATGGTAAGTTGATGTTTGAGA
CTTTTGAACTGCAGCCCCGTGGCACAGCGGTAGGGACGATTCAGCATCGT
TTTTTCATCATCGTTGTGGGTGCATTCACCATGGCGCAGATACGTCCCTC
GGCCACGATGTTCATCGATGAACTTTTATATCCCTTCAACGCTTGAGTGC
AACGTCGGTAGTCTACCGCACACTGCTGTACCGCTGCACCATACTCTCGC
ACGCAAAACGCGGCGGAATCACCCCGCGCCATCTGGCGGAATCGCCCCGC
CCCACCGCCGCCGGTCTGCCGCTACTTTTGGCGCACCCTCCCTGGACGCA
TGTTTACTTGTATGGCGTTTGCTGAGCTGCTATATCGCCCCCTCCCGTGT
GTCTATCGAGCCTCTCCTCCTTGGATGTGTCTCGTTGGTAACTTTCCTCC
TGTCCAGCTGAGCGGAAAGCCGCCGGCCCGGAGCCGTCCTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8953:3613..4454-

>mRNA_Ecto-sp13_S_contig8953.20486.1 ID=mRNA_Ecto-sp13_S_contig8953.20486.1|Name=mRNA_Ecto-sp13_S_contig8953.20486.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8953:3613..4454- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTGCGCATCGTGGCTGTTTTTATCTCGCTGATGGAGGACAGCACCACCT
GATGGCGACTCCGCGGGGCCTACTCTTCCTGCTGGGCGCAGCGTTATTCT
TCGCGACGCATGGGTTAAGACTTGTCGGGTCATTCACGTTGCATTTTCCC
GTGTTCAGGAGAACGTCGCTGTTGAGCGGGGCCGCGAGAGTATCATGTCG
TCGTCCATTTCCATCTGCACCGGCGGCGCGTTGCCAATGTTTTGCTAATG
CTGAGTCTACCCAAACCGGCACGATCGGCGGAAGGGAGCAGAAACACAGA
AATCGTGCGGGAAAAGGGTCGTTGTCCACGCCGACTGCGCCATCATTTTC
GAAAGCACAAGATGAAGCTGGGTCGAAGGATGCTGAGCGGAAAGCCGCCG
GCCCGGAGCCGTCCTGG
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