prot_Ecto-sp13_S_contig8948.20475.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8948.20475.1
Unique Nameprot_Ecto-sp13_S_contig8948.20475.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length332
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8948.20475.1 vs. uniprot
Match: D7FW31_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW31_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 2.990e-111
Identity = 172/176 (97.73%), Postives = 172/176 (97.73%), Query Frame = 0 
Query:  157 LEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHAARPAGYTSNEVLEWVRAQRMFHDRATEEWDQKAGLYLTGRASAKEFVEGVRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEVAEREQVATEFSATRDDQMRLCAADAQARIERDKRRGSVQSTIANARLA 332
            LEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHA RPAGYTSNEVLEWVRAQRMFHD ATEEWDQKAGLYLTGRASAKEFVEGVRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEVAER QVATE SATRDDQMRLCAADAQARIERDKRRGSVQSTIANARLA
Sbjct:  358 LEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHATRPAGYTSNEVLEWVRAQRMFHDHATEEWDQKAGLYLTGRASAKEFVEGVRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEVAERGQVATELSATRDDQMRLCAADAQARIERDKRRGSVQSTIANARLA 533
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BLAST of mRNA_Ecto-sp13_S_contig8948.20475.1 vs. uniprot
Match: A0A6H5JF42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF42_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 5.490e-104
Identity = 170/176 (96.59%), Postives = 170/176 (96.59%), Query Frame = 0 
Query:  157 LEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHAARPAGYTSNEVLEWVRAQRMFHDRATEEWDQKAGLYLTGRASAKEFVEGVRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEVAEREQVATEFSATRDDQMRLCAADAQARIERDKRRGSVQSTIANARLA 332
            LEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHA RPAGYTSNEVLEWVRAQRMFHD ATEEWDQKAGLYLTGRASAKEFVE VRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAE AER QVATE SATRDDQMRLCAADAQARIERDKRRGSVQSTIANARLA
Sbjct:  984 LEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHATRPAGYTSNEVLEWVRAQRMFHDHATEEWDQKAGLYLTGRASAKEFVESVRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEAAERGQVATELSATRDDQMRLCAADAQARIERDKRRGSVQSTIANARLA 1159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8948.20475.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW31_ECTSI2.990e-11197.73Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JF42_9PHAE5.490e-10496.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 152..172
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 1..127
coord: 91..181
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..182
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 47..70
e-value: 0.071
score: 22.2
coord: 23..46
e-value: 210.0
score: 2.4
coord: 116..138
e-value: 370.0
score: 0.4
coord: 93..115
e-value: 9.4
score: 13.5
coord: 139..162
e-value: 5.6
score: 15.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 81..181
e-value: 1.1E-20
score: 75.6
coord: 1..80
e-value: 1.2E-21
score: 78.8
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 2..60
e-value: 4.5E-8
score: 32.7
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 2..23
score: 6.826
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 25..47
score: 6.002
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 49..70
score: 7.604
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 72..94
score: 6.241
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 165..186
score: 6.103
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 118..139
score: 6.026
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 141..162
score: 6.464
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 95..116
score: 7.604

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8948contigEcto-sp13_S_contig8948:132..2794 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8948.20475.1mRNA_Ecto-sp13_S_contig8948.20475.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8948 132..2795 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8948.20475.1 ID=prot_Ecto-sp13_S_contig8948.20475.1|Name=mRNA_Ecto-sp13_S_contig8948.20475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=332bp
TRLHDINLRSNLITKIPDEIGALKQLNTLGLAHNRLDRRLPDHLGLLTRL
THLDISSNNIGSLPPSLGALEDLETLNASKNALGNLPQNFTFLTSLTDLD
LSCNRFKDIPMLLCGMKNLLRLDLTSNIICTLPREIGALTTLTKLHLRHN
LLKSLPLEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHAARPAGYT
SNEVLEWVRAQRMFHDRATEEWDQKAGLYLTGRASAKEFVEGVRARVGEG
VWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEVAEREQVATEFSATRDD
QMRLCAADAQARIERDKRRGSVQSTIANARLA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt