mRNA_Ecto-sp13_S_contig8948.20475.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8948.20475.1
Unique NamemRNA_Ecto-sp13_S_contig8948.20475.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8948.20475.1 vs. uniprot
Match: D7FW31_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW31_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 2.990e-111
Identity = 172/176 (97.73%), Postives = 172/176 (97.73%), Query Frame = 1 
Query:  469 LEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHAARPAGYTSNEVLEWVRAQRMFHDRATEEWDQKAGLYLTGRASAKEFVEGVRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEVAEREQVATEFSATRDDQMRLCAADAQARIERDKRRGSVQSTIANARLA 996
            LEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHA RPAGYTSNEVLEWVRAQRMFHD ATEEWDQKAGLYLTGRASAKEFVEGVRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEVAER QVATE SATRDDQMRLCAADAQARIERDKRRGSVQSTIANARLA
Sbjct:  358 LEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHATRPAGYTSNEVLEWVRAQRMFHDHATEEWDQKAGLYLTGRASAKEFVEGVRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEVAERGQVATELSATRDDQMRLCAADAQARIERDKRRGSVQSTIANARLA 533
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BLAST of mRNA_Ecto-sp13_S_contig8948.20475.1 vs. uniprot
Match: A0A6H5JF42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF42_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 5.490e-104
Identity = 170/176 (96.59%), Postives = 170/176 (96.59%), Query Frame = 1 
Query:  469 LEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHAARPAGYTSNEVLEWVRAQRMFHDRATEEWDQKAGLYLTGRASAKEFVEGVRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEVAEREQVATEFSATRDDQMRLCAADAQARIERDKRRGSVQSTIANARLA 996
            LEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHA RPAGYTSNEVLEWVRAQRMFHD ATEEWDQKAGLYLTGRASAKEFVE VRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAE AER QVATE SATRDDQMRLCAADAQARIERDKRRGSVQSTIANARLA
Sbjct:  984 LEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHATRPAGYTSNEVLEWVRAQRMFHDHATEEWDQKAGLYLTGRASAKEFVESVRARVGEGVWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEAAERGQVATELSATRDDQMRLCAADAQARIERDKRRGSVQSTIANARLA 1159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8948.20475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW31_ECTSI2.990e-11197.73Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JF42_9PHAE5.490e-10496.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8948contigEcto-sp13_S_contig8948:132..2795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score344.0
Seed ortholog evalue8e-92
Seed eggNOG ortholog2880.D7FW31
Model size997
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size996
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464167.0985155-CDS-Ecto-sp13_S_contig8948:131..3441681464167.0985155-CDS-Ecto-sp13_S_contig8948:131..344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8948 132..344 +
1681464167.1127052-CDS-Ecto-sp13_S_contig8948:710..9551681464167.1127052-CDS-Ecto-sp13_S_contig8948:710..955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8948 711..955 +
1681464167.123536-CDS-Ecto-sp13_S_contig8948:1264..14151681464167.123536-CDS-Ecto-sp13_S_contig8948:1264..1415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8948 1265..1415 +
1681464167.1343012-CDS-Ecto-sp13_S_contig8948:1854..20791681464167.1343012-CDS-Ecto-sp13_S_contig8948:1854..2079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8948 1855..2079 +
1681464167.1456091-CDS-Ecto-sp13_S_contig8948:2632..27941681464167.1456091-CDS-Ecto-sp13_S_contig8948:2632..2794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8948 2633..2794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8948.20475.1prot_Ecto-sp13_S_contig8948.20475.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8948 132..2794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8948.20475.1

>prot_Ecto-sp13_S_contig8948.20475.1 ID=prot_Ecto-sp13_S_contig8948.20475.1|Name=mRNA_Ecto-sp13_S_contig8948.20475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=332bp
TRLHDINLRSNLITKIPDEIGALKQLNTLGLAHNRLDRRLPDHLGLLTRL
THLDISSNNIGSLPPSLGALEDLETLNASKNALGNLPQNFTFLTSLTDLD
LSCNRFKDIPMLLCGMKNLLRLDLTSNIICTLPREIGALTTLTKLHLRHN
LLKSLPLEMVELEKNVKDLNLEQNPLPVLPDKWHLRFGLEAHAARPAGYT
SNEVLEWVRAQRMFHDRATEEWDQKAGLYLTGRASAKEFVEGVRARVGEG
VWRPYLEPHVLRVFFRAKKNGLPDAYHKISEAEVAEREQVATEFSATRDD
QMRLCAADAQARIERDKRRGSVQSTIANARLA
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mRNA from alignment at Ecto-sp13_S_contig8948:132..2795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8948.20475.1 ID=mRNA_Ecto-sp13_S_contig8948.20475.1|Name=mRNA_Ecto-sp13_S_contig8948.20475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2664bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8948:132..2795+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAGGTTGCACGACATCAACTTGCGGTCCAACCTCATCACCAAAATCCC
GGACGAAATTGGAGCTCTGAAGCAACTCAACACCTTGGGCCTGGCGCATA
ACCGCCTTGACCGCCGCCTCCCGGATCATCTTGGGCTGCTGACCCGCTTA
ACACACCTGGACATCTCGAGTAACAACATCGGAAGCTTGCCGCCATCGTT
AGGTGCTCTCGAGGTAAGTTTGAGAGCACGTGGGGGAGGGTACGCTATGA
CACGTTTAGCACTGGGCGTGGTGGGTGGCACTGGCGACGTACAGAAGAGA
TGAGAAGAACCGGGGGGGAATTGGACGGGAGGGGGCGAGGGCACGAAGAG
CATAATCTCTTTTTCAAACGCGCAGACTCTGCGGTTTCTGTGGAGAGATG
TTCACGTCGTGGCACGTTCTTAGCTTTCCAAATGCTCATGTTGTTCGCGT
CTCGCGGAACATGATGACATCACGGCTCTTCTTGTCGACACCAAACGGAG
TGATGCCGAACGACACCAGGAATACCAGTTTCAACCGTCACCGGACGACG
TTCTCCCCCACCCGTCCACGTTCGGCCAGGATCTGGAAACTCTCAACGCA
TCAAAGAACGCTCTCGGAAACCTGCCACAGAACTTCACGTTCCTCACGAG
TCTAACAGACCTGGACCTGAGCTGCAATCGTTTCAAGGACATCCCGATGC
TTCTATGCGGCATGAAGAACTTGCTACGGCTTGACCTGACGTCCAACATC
ATCTGCACTCTGCCACGGGAGATCGGGGCCCTAACGACGCTAACTAAACT
GCACCTCAGGCACAACCTGCTTAAGTGAGCAAAAAGGCATTGTAATGGTG
ATGATGACAATGAGTGATAGTACAGGCAGTGGAAATAACCATTTACCACG
CGTGGAGGACATTCATTCTCGGTGGCTGCACGTAGTAGTCCGGCTTTGTT
CTGGCCTCAGAAACTCCTGATTTGCACCCTCTTCACTCACGCAAGATTGG
TACACAGAAGACAGCGAACCTGTAAAGCACGTGATACTCCGCCTGCCTGA
CTGTGTGTGTTCAGACTCCATGCATCCACAACAATAGTGATTAAAAGCTG
ACACTGCGTAACGGCGACTCGTGCACCGACCAGATCACTTCCCCTGGAAA
TGGTTGAGCTAGAGAAGAACGTCAAGGACCTCAACCTTGAGCAGAACCCG
CTTCCGGTGCTACCGGACAAGTGGCACCTTCGCTTCGGACTCGAGGCACA
CGCCGCCCGTCCTGCAGGGTACACGAGCAACGAGGTGTGTGTGTGCCGCG
ATTGTTTTTCCCGGCCTTCGTAGATGATGTGACCCGTAGCACTTAAAAGA
GGCAGGGGAGGATCTCGAATACGCTGGGGAGGAACTGTTTTGTTGACGAG
CCAGTGCTGAGGTTATGGCACGGGTCGTGATGGCGACAGCGAGGGGGGGT
GTTTCGTGTTGAATGACCCGCTCCAAGCGCGTGATCGGCACCCATCCCAT
GTTAAACGTCCAAGATTACGTACACAGATGCGAATGGTCGACTACCCGTT
CTGGTTGACGCCTACCCGTGTGTTCGTTTTTTTACGAAAACCTCATGGTA
AGTGTAACAGGAGGTTTCCCCTCCCAACTTTGGTAGTGTCTTCGAGACCG
CAGCTGACGAACACCATTCTTTTTCGTGGGCTTTGTCTAAGTGAAGCACC
CATCGATCGAGTACTTGTGCCAGGTCTTGGAATGGGTACGCGCCCAGCGC
ATGTTCCACGACCGCGCCACGGAAGAGTGGGACCAGAAGGCGGGGCTGTA
CCTCACGGGCCGCGCCTCGGCAAAGGAGTTTGTAGAGGGCGTGCGAGCTC
GCGTGGGGGAGGGCGTCTGGCGGCCGTACCTCGAGCCGCATGTGCTACGC
GTGTTCTTCAGGGCGAAGAAGAACGGACTGCCGGACGCGTATCACAAGGT
AAAAGCAAAGTGTAGCGTTGCTGTTTTCCCCTATCTCACGATTCGTTCCG
GGAGCAGGGTTGGACGGGTTCGTTTCTCATTGTCTCGGGTTTTGCCGTTG
TTCGAGGTACAACCGAGCTGCACTTGGTACCTTGACACCGAGACATCAAC
TCGGGCTACAGTGCGTAGGTGCCCGCCTTTCGTGTTCTTTATTGCGTGAT
TCGATTCCTCCTAGTAAGCAGAGCGGTATGAAGTAAGCTGACAAGGGCAC
GATACCGTGCCTCGTCGTTGACCCGTCGAGATAGAGCACAAGAGAGAATC
GATACAACATGACCATACAGAGAGATGTGTTTGTTTTTCGGATACTGTAT
ATCGCAGAGCCGAAAAGCATTCGCTCTACCAGTTATGTGGGGTCTTGACG
AAGTCAACCCGTGGGCTGTATCGACTTCATGCTGTGTAAGTATACTGTCC
TCGAGTTATTGCAAGGTGCACCGTTTACTTGTCGATATGCGCACGACACC
GAAGTGTCTCGAGTCTCTGTCTTTTTCGCTGTCCTCCTCCTTGCCGATCA
GATCAGCGAAGCCGAGGTCGCGGAGCGAGAACAGGTTGCGACCGAATTTT
CCGCCACAAGGGACGACCAAATGCGCTTGTGCGCGGCTGATGCTCAAGCC
CGGATAGAGAGGGACAAAAGGAGAGGCTCCGTACAGTCCACCATTGCAAA
TGCCCGTCTCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8948:132..2795+

>mRNA_Ecto-sp13_S_contig8948.20475.1 ID=mRNA_Ecto-sp13_S_contig8948.20475.1|Name=mRNA_Ecto-sp13_S_contig8948.20475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=996bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8948:132..2795+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAGGTTGCACGACATCAACTTGCGGTCCAACCTCATCACCAAAATCCC
GGACGAAATTGGAGCTCTGAAGCAACTCAACACCTTGGGCCTGGCGCATA
ACCGCCTTGACCGCCGCCTCCCGGATCATCTTGGGCTGCTGACCCGCTTA
ACACACCTGGACATCTCGAGTAACAACATCGGAAGCTTGCCGCCATCGTT
AGGTGCTCTCGAGGATCTGGAAACTCTCAACGCATCAAAGAACGCTCTCG
GAAACCTGCCACAGAACTTCACGTTCCTCACGAGTCTAACAGACCTGGAC
CTGAGCTGCAATCGTTTCAAGGACATCCCGATGCTTCTATGCGGCATGAA
GAACTTGCTACGGCTTGACCTGACGTCCAACATCATCTGCACTCTGCCAC
GGGAGATCGGGGCCCTAACGACGCTAACTAAACTGCACCTCAGGCACAAC
CTGCTTAAATCACTTCCCCTGGAAATGGTTGAGCTAGAGAAGAACGTCAA
GGACCTCAACCTTGAGCAGAACCCGCTTCCGGTGCTACCGGACAAGTGGC
ACCTTCGCTTCGGACTCGAGGCACACGCCGCCCGTCCTGCAGGGTACACG
AGCAACGAGGTCTTGGAATGGGTACGCGCCCAGCGCATGTTCCACGACCG
CGCCACGGAAGAGTGGGACCAGAAGGCGGGGCTGTACCTCACGGGCCGCG
CCTCGGCAAAGGAGTTTGTAGAGGGCGTGCGAGCTCGCGTGGGGGAGGGC
GTCTGGCGGCCGTACCTCGAGCCGCATGTGCTACGCGTGTTCTTCAGGGC
GAAGAAGAACGGACTGCCGGACGCGTATCACAAGATCAGCGAAGCCGAGG
TCGCGGAGCGAGAACAGGTTGCGACCGAATTTTCCGCCACAAGGGACGAC
CAAATGCGCTTGTGCGCGGCTGATGCTCAAGCCCGGATAGAGAGGGACAA
AAGGAGAGGCTCCGTACAGTCCACCATTGCAAATGCCCGTCTCGCC
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