prot_Ecto-sp13_S_contig8899.20396.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8899.20396.1
Unique Nameprot_Ecto-sp13_S_contig8899.20396.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length83
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8899.20396.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.550e-18
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 0 
Query:    1 MLNEDMRDVWVAMFVKGDGNCFWRAVAKVIWGNDCFWAQLKLVVLGWTAAHAEALVAESGPLFKDPRF--YTTDIMGRHVF 79
            +L  ++R  +VA++V+GDGNCFWR++AK +WG D +W QLKL VL W+A + EALV E G LF       Y  +I  +H++
Sbjct:   93 ILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALFGRAGIIHYDDEIHAKHIY 173
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8899.20396.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.110e-16
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 0 
Query:    7 RDVWVAMFVKGDGNCFWRAVAKVIWGNDCFWAQLKLVVLGWTAAHAEALVAESGPLFKDPRFYTTDI 73
            ++ WVA++V+GDGNC WR++AK +W +D +W+QLKLVVL W AAHAE LV+E   L      ++ DI
Sbjct:    3 KEGWVALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAHAEELVSEGRVLSDFSLHFSDDI 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8899.20396.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE1.550e-1846.91SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE3.110e-1652.24SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.70.80coord: 1..79
e-value: 9.7E-6
score: 27.6
IPR003323OTU domainPROSITEPS50802OTUcoord: 10..83
score: 8.804

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8899contigEcto-sp13_S_contig8899:704..952 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8899.20396.1mRNA_Ecto-sp13_S_contig8899.20396.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8899 704..952 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8899.20396.1 ID=prot_Ecto-sp13_S_contig8899.20396.1|Name=mRNA_Ecto-sp13_S_contig8899.20396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
MLNEDMRDVWVAMFVKGDGNCFWRAVAKVIWGNDCFWAQLKLVVLGWTAA
HAEALVAESGPLFKDPRFYTTDIMGRHVFTDVF
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003323OTU_dom