mRNA_Ecto-sp13_S_contig8899.20396.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8899.20396.1
Unique NamemRNA_Ecto-sp13_S_contig8899.20396.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8899.20396.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.550e-18
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:    1 MLNEDMRDVWVAMFVKGDGNCFWRAVAKVIWGNDCFWAQLKLVVLGWTAAHAEALVAESGPLFKDPRF--YTTDIMGRHVF 237
            +L  ++R  +VA++V+GDGNCFWR++AK +WG D +W QLKL VL W+A + EALV E G LF       Y  +I  +H++
Sbjct:   93 ILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALFGRAGIIHYDDEIHAKHIY 173
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BLAST of mRNA_Ecto-sp13_S_contig8899.20396.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.110e-16
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   19 RDVWVAMFVKGDGNCFWRAVAKVIWGNDCFWAQLKLVVLGWTAAHAEALVAESGPLFKDPRFYTTDI 219
            ++ WVA++V+GDGNC WR++AK +W +D +W+QLKLVVL W AAHAE LV+E   L      ++ DI
Sbjct:    3 KEGWVALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAHAEELVSEGRVLSDFSLHFSDDI 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8899.20396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE1.550e-1846.91SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE3.110e-1652.24SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8899contigEcto-sp13_S_contig8899:704..952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size250
Hectar predicted targeting categoryother localisation
Exons1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464161.7376344-CDS-Ecto-sp13_S_contig8899:703..9521681464161.7376344-CDS-Ecto-sp13_S_contig8899:703..952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8899 704..952 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8899.20396.1prot_Ecto-sp13_S_contig8899.20396.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8899 704..952 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8899.20396.1

>prot_Ecto-sp13_S_contig8899.20396.1 ID=prot_Ecto-sp13_S_contig8899.20396.1|Name=mRNA_Ecto-sp13_S_contig8899.20396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
MLNEDMRDVWVAMFVKGDGNCFWRAVAKVIWGNDCFWAQLKLVVLGWTAA
HAEALVAESGPLFKDPRFYTTDIMGRHVFTDVF
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mRNA from alignment at Ecto-sp13_S_contig8899:704..952+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8899.20396.1 ID=mRNA_Ecto-sp13_S_contig8899.20396.1|Name=mRNA_Ecto-sp13_S_contig8899.20396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8899:704..952+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAACGAGGACATGCGGGACGTATGGGTGGCGATGTTTGTGAAGGG
CGACGGTAACTGCTTTTGGCGTGCCGTTGCCAAGGTGATATGGGGCAACG
ACTGTTTTTGGGCCCAACTGAAGCTCGTGGTTCTGGGGTGGACAGCCGCG
CACGCGGAAGCTCTCGTGGCAGAGAGCGGTCCCCTCTTTAAGGATCCCAG
GTTCTATACCACCGACATCATGGGACGACATGTCTTCACCGATGTTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8899:704..952+

>mRNA_Ecto-sp13_S_contig8899.20396.1 ID=mRNA_Ecto-sp13_S_contig8899.20396.1|Name=mRNA_Ecto-sp13_S_contig8899.20396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8899:704..952+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAACGAGGACATGCGGGACGTATGGGTGGCGATGTTTGTGAAGGG
CGACGGTAACTGCTTTTGGCGTGCCGTTGCCAAGGTGATATGGGGCAACG
ACTGTTTTTGGGCCCAACTGAAGCTCGTGGTTCTGGGGTGGACAGCCGCG
CACGCGGAAGCTCTCGTGGCAGAGAGCGGTCCCCTCTTTAAGGATCCCAG
GTTCTATACCACCGACATCATGGGACGACATGTCTTCACCGATGTTTTT
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