prot_Ecto-sp13_S_contig8799.20278.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8799.20278.1
Unique Nameprot_Ecto-sp13_S_contig8799.20278.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length63
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8799.20278.1 vs. uniprot
Match: D7G1X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.450e-21
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 0 
Query:    1 MNCSMEGCTRTRAFESAHADGSPFELAKNVEKADAVLYFLLCFTGRVPALSRFRNKRFPPAR 62
            M CS+EGCT+TR F+SA ADG  F+ AKNVEKA++VL F   F  RVPALS FRNKRFP AR
Sbjct:    1 MQCSIEGCTKTRFFQSAQADGGSFKQAKNVEKAESVLLFCCVFARRVPALSWFRNKRFPLAR 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8799.20278.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1X3_ECTSI2.450e-2167.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 54..62
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8799contigEcto-sp13_S_contig8799:372..768 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8799.20278.1mRNA_Ecto-sp13_S_contig8799.20278.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8799 372..768 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8799.20278.1 ID=prot_Ecto-sp13_S_contig8799.20278.1|Name=mRNA_Ecto-sp13_S_contig8799.20278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MNCSMEGCTRTRAFESAHADGSPFELAKNVEKADAVLYFLLCFTGRVPAL
SRFRNKRFPPAR*
back to top