mRNA_Ecto-sp13_S_contig8799.20278.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8799.20278.1
Unique NamemRNA_Ecto-sp13_S_contig8799.20278.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8799.20278.1 vs. uniprot
Match: D7G1X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.450e-21
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 MNCSMEGCTRTRAFESAHADGSPFELAKNVEKADAVLYFLLCFTGRVPALSRFRNKRFPPAR 186
            M CS+EGCT+TR F+SA ADG  F+ AKNVEKA++VL F   F  RVPALS FRNKRFP AR
Sbjct:    1 MQCSIEGCTKTRFFQSAQADGGSFKQAKNVEKAESVLLFCCVFARRVPALSWFRNKRFPLAR 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8799.20278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1X3_ECTSI2.450e-2167.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8799contigEcto-sp13_S_contig8799:372..768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size189
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_003790.1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464152.6460345-CDS-Ecto-sp13_S_contig8799:371..4831681464152.6460345-CDS-Ecto-sp13_S_contig8799:371..483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8799 372..483 +
1681464152.6655424-CDS-Ecto-sp13_S_contig8799:691..7681681464152.6655424-CDS-Ecto-sp13_S_contig8799:691..768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8799 692..768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8799.20278.1prot_Ecto-sp13_S_contig8799.20278.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8799 372..768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8799.20278.1

>prot_Ecto-sp13_S_contig8799.20278.1 ID=prot_Ecto-sp13_S_contig8799.20278.1|Name=mRNA_Ecto-sp13_S_contig8799.20278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MNCSMEGCTRTRAFESAHADGSPFELAKNVEKADAVLYFLLCFTGRVPAL
SRFRNKRFPPAR*
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mRNA from alignment at Ecto-sp13_S_contig8799:372..768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8799.20278.1 ID=mRNA_Ecto-sp13_S_contig8799.20278.1|Name=mRNA_Ecto-sp13_S_contig8799.20278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=397bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8799:372..768+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATTGTTCTATGGAGGGGTGCACGAGAACGCGTGCTTTTGAATCAGC
GCACGCAGACGGTAGTCCCTTTGAGCTGGCGAAGAATGTGGAAAAGGCGG
ATGCCGTGTTGTGTTTAGCGGTGAAAGCGACCGAGCGACCGAGCTGGAGT
GTGTGTGTGTGTGTGTGTGTGTGTGTTTCTTCTTGCCGCCAGCTCTCAAA
AGCTTGCCTTGCATTGCTAGCACACTGTTTCGTTTCCGTGTCTGGTGGAA
ACTTGCGCGTTGGGGTGGTACTCTGTTGATGGTTAGTGGTCCGACGATAA
TCTTTCCTACGGCTTGGCAGACTTTCTGTTATGTTTCACTGGTAGGGTTC
CCGCGTTGAGTCGGTTCAGGAACAAGCGTTTTCCTCCTGCACGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8799:372..768+

>mRNA_Ecto-sp13_S_contig8799.20278.1 ID=mRNA_Ecto-sp13_S_contig8799.20278.1|Name=mRNA_Ecto-sp13_S_contig8799.20278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8799:372..768+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATTGTTCTATGGAGGGGTGCACGAGAACGCGTGCTTTTGAATCAGC
GCACGCAGACGGTAGTCCCTTTGAGCTGGCGAAGAATGTGGAAAAGGCGG
ATGCCGTGTTGTACTTTCTGTTATGTTTCACTGGTAGGGTTCCCGCGTTG
AGTCGGTTCAGGAACAAGCGTTTTCCTCCTGCACGCTAG
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