prot_Ecto-sp13_S_contig87740.20242.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig87740.20242.1
Unique Nameprot_Ecto-sp13_S_contig87740.20242.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length67
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: RL34_MARN8 (50S ribosomal protein L34 n=13 Tax=Gammaproteobacteria TaxID=1236 RepID=RL34_MARN8)

HSP 1 Score: 73.2 bits (178), Expect = 5.890e-16
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 38
            MKRTFQPSVLKRKRVHGFRARMATANGRKV+SRRRAKG
Sbjct:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVLSRRRAKG 38
[Close]
BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: RL34_SACD2 (50S ribosomal protein L34 n=8 Tax=Gammaproteobacteria TaxID=1236 RepID=RL34_SACD2)

HSP 1 Score: 71.6 bits (174), Expect = 2.400e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 38
            MKRTFQPSVLKRKR HGFRARMATANGRKV+SRRRAKG
Sbjct:    1 MKRTFQPSVLKRKRTHGFRARMATANGRKVLSRRRAKG 38
[Close]
BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: A0A2A9FMB9_9GAMM (50S ribosomal protein L34 n=1 Tax=Marinobacter sp. LV10R520-4 TaxID=1761796 RepID=A0A2A9FMB9_9GAMM)

HSP 1 Score: 72.0 bits (175), Expect = 3.060e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 0 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 38
            MKRTFQPSVLKRKRVHGFRARMATANGRKV++RRRAKG
Sbjct:   26 MKRTFQPSVLKRKRVHGFRARMATANGRKVLARRRAKG 63
[Close]
BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: A0A1I3B9J9_9GAMM (50S ribosomal protein L34 n=6 Tax=Halomonadaceae TaxID=28256 RepID=A0A1I3B9J9_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 1.970e-14
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 38
            MKRTFQPSVLKRKRVHGFRARMAT NGR+VI+RRRAKG
Sbjct:    1 MKRTFQPSVLKRKRVHGFRARMATKNGRQVIARRRAKG 38
[Close]
BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: A0A2E4FF63_9GAMM (50S ribosomal protein L34 n=44 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E4FF63_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 1.970e-14
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 38
            MKRTFQPSVLKRKR HGFRARMATANGRKV+SRRRA+G
Sbjct:    1 MKRTFQPSVLKRKRNHGFRARMATANGRKVLSRRRARG 38
[Close]
BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: RL34_PSET1 (50S ribosomal protein L34 n=103 Tax=root TaxID=1 RepID=RL34_PSET1)

HSP 1 Score: 68.9 bits (167), Expect = 2.810e-14
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 38
            MKRTFQPSVLKRKR HGFRARMAT NGRKV++RRRAKG
Sbjct:    1 MKRTFQPSVLKRKRAHGFRARMATVNGRKVLARRRAKG 38
[Close]
BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: W7PQV9_9GAMM (50S ribosomal protein L34 n=5 Tax=Halomonas TaxID=2745 RepID=W7PQV9_9GAMM)

HSP 1 Score: 68.9 bits (167), Expect = 2.810e-14
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 38
            MKRTFQPSVLKRKRVHGFRARMAT NGR V+SRRRAKG
Sbjct:    1 MKRTFQPSVLKRKRVHGFRARMATKNGRAVLSRRRAKG 38
[Close]
BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: A0A1T1HCC4_OCELI (50S ribosomal protein L34 n=5 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1T1HCC4_OCELI)

HSP 1 Score: 68.9 bits (167), Expect = 2.810e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKGHI 40
            MKRTFQPSVLKRKR HGFRARMAT NGRK+I+RRRAKG +
Sbjct:    1 MKRTFQPSVLKRKRNHGFRARMATKNGRKIITRRRAKGRV 40
[Close]
BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: RL34_CHRSD (50S ribosomal protein L34 n=43 Tax=Gammaproteobacteria TaxID=1236 RepID=RL34_CHRSD)

HSP 1 Score: 68.6 bits (166), Expect = 3.990e-14
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 38
            MKRTFQPSVLKRKRVHGFRARMAT NGR+V++RRRAKG
Sbjct:    1 MKRTFQPSVLKRKRVHGFRARMATKNGRQVLARRRAKG 38
[Close]
BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: A0A2E6UAX5_9GAMM (50S ribosomal protein L34 n=6 Tax=Idiomarinaceae TaxID=267893 RepID=A0A2E6UAX5_9GAMM)

HSP 1 Score: 68.2 bits (165), Expect = 5.660e-14
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 38
            MKRTFQPSVLKRKR HGFRARMAT NGRKVI+RRRA+G
Sbjct:    1 MKRTFQPSVLKRKRTHGFRARMATKNGRKVIARRRARG 38
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RL34_MARN85.890e-1697.3750S ribosomal protein L34 n=13 Tax=Gammaproteobact... [more]
RL34_SACD22.400e-1594.7450S ribosomal protein L34 n=8 Tax=Gammaproteobacte... [more]
A0A2A9FMB9_9GAMM3.060e-1594.7450S ribosomal protein L34 n=1 Tax=Marinobacter sp.... [more]
A0A1I3B9J9_9GAMM1.970e-1492.1150S ribosomal protein L34 n=6 Tax=Halomonadaceae T... [more]
A0A2E4FF63_9GAMM1.970e-1492.1150S ribosomal protein L34 n=44 Tax=Gammaproteobact... [more]
RL34_PSET12.810e-1489.4750S ribosomal protein L34 n=103 Tax=root TaxID=1 R... [more]
W7PQV9_9GAMM2.810e-1492.1150S ribosomal protein L34 n=5 Tax=Halomonas TaxID=... [more]
A0A1T1HCC4_OCELI2.810e-1485.0050S ribosomal protein L34 n=5 Tax=Gammaproteobacte... [more]
RL34_CHRSD3.990e-1489.4750S ribosomal protein L34 n=43 Tax=Gammaproteobact... [more]
A0A2E6UAX5_9GAMM5.660e-1489.4750S ribosomal protein L34 n=6 Tax=Idiomarinaceae T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000271Ribosomal protein L34PFAMPF00468Ribosomal_L34coord: 1..38
e-value: 6.2E-22
score: 77.3
IPR000271Ribosomal protein L34TIGRFAMTIGR01030TIGR01030coord: 1..38
e-value: 4.9E-23
score: 79.1
IPR000271Ribosomal protein L34PANTHERPTHR14503MITOCHONDRIAL RIBOSOMAL PROTEIN 34 FAMILY MEMBERcoord: 2..38
IPR000271Ribosomal protein L34HAMAPMF_00391Ribosomal_L34coord: 1..44
score: 14.044
IPR020939Ribosomal protein L34, conserved sitePROSITEPS00784RIBOSOMAL_L34coord: 2..21
NoneNo IPR availablePRODOMPD003101coord: 1..38
e-value: 7.0E-14
score: 181.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig87740contigEcto-sp13_S_contig87740:3..224 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig87740.20242.1mRNA_Ecto-sp13_S_contig87740.20242.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig87740 3..224 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig87740.20242.1 ID=prot_Ecto-sp13_S_contig87740.20242.1|Name=mRNA_Ecto-sp13_S_contig87740.20242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKGHIDRLMKALTFP
KSSRLLKPSDYGKVFDD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000271Ribosomal_L34
IPR020939Ribosomal_L34_CS