mRNA_Ecto-sp13_S_contig87740.20242.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig87740.20242.1
Unique NamemRNA_Ecto-sp13_S_contig87740.20242.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: A0A0F9PUK3_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9PUK3_9ZZZZ)

HSP 1 Score: 84.0 bits (206), Expect = 4.090e-19
Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = -1 
Query:    1 VIEDFAVIGWLEQPGRFWKGQSLHQAVNV-------ALGATTGNYLTAVGGCHAGTETVNALTLQYAWLKRSFH 201
            V+ED A++GW ++  RF K QSLH+ ++        A GAT  N   AVG CH  TETVNA TLQYAWLKRSFH
Sbjct:   55 VVEDAAIVGWSQKTMRFRKIQSLHKTIDTLRRQTCTAFGATARNDFAAVGSCHTSTETVNAFTLQYAWLKRSFH 128
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BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: A0A1D9GP48_9GAMM (Uncharacterized protein n=1 Tax=Marinobacter salinus TaxID=1874317 RepID=A0A1D9GP48_9GAMM)

HSP 1 Score: 80.1 bits (196), Expect = 6.700e-17
Identity = 45/74 (60.81%), Postives = 51/74 (68.92%), Query Frame = -1 
Query:    1 VIEDFAVIGWLEQPGRFWKGQSLHQAVN-------VALGATTGNYLTAVGGCHAGTETVNALTLQYAWLKRSFH 201
            VI+DFAVI W ++  RF K QSLH+A N        A G TTGN LTAV   H GT+TV+ALTLQ AWLKRSFH
Sbjct:   93 VIKDFAVISWPQKAVRFRKIQSLHEADNRLRRQTCAAFGTTTGNNLTAVCCGHTGTKTVDALTLQDAWLKRSFH 166
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BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: RL34_MARN8 (50S ribosomal protein L34 n=13 Tax=Gammaproteobacteria TaxID=1236 RepID=RL34_MARN8)

HSP 1 Score: 73.2 bits (178), Expect = 5.890e-16
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 114
            MKRTFQPSVLKRKRVHGFRARMATANGRKV+SRRRAKG
Sbjct:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVLSRRRAKG 38
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BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: RL34_SACD2 (50S ribosomal protein L34 n=8 Tax=Gammaproteobacteria TaxID=1236 RepID=RL34_SACD2)

HSP 1 Score: 71.6 bits (174), Expect = 2.400e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 114
            MKRTFQPSVLKRKR HGFRARMATANGRKV+SRRRAKG
Sbjct:    1 MKRTFQPSVLKRKRTHGFRARMATANGRKVLSRRRAKG 38
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BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: A0A2A9FMB9_9GAMM (50S ribosomal protein L34 n=1 Tax=Marinobacter sp. LV10R520-4 TaxID=1761796 RepID=A0A2A9FMB9_9GAMM)

HSP 1 Score: 72.0 bits (175), Expect = 3.060e-15
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 114
            MKRTFQPSVLKRKRVHGFRARMATANGRKV++RRRAKG
Sbjct:   26 MKRTFQPSVLKRKRVHGFRARMATANGRKVLARRRAKG 63
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BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: A0A1I3B9J9_9GAMM (50S ribosomal protein L34 n=6 Tax=Halomonadaceae TaxID=28256 RepID=A0A1I3B9J9_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 1.970e-14
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 114
            MKRTFQPSVLKRKRVHGFRARMAT NGR+VI+RRRAKG
Sbjct:    1 MKRTFQPSVLKRKRVHGFRARMATKNGRQVIARRRAKG 38
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BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: A0A2E4FF63_9GAMM (50S ribosomal protein L34 n=44 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E4FF63_9GAMM)

HSP 1 Score: 69.3 bits (168), Expect = 1.970e-14
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 114
            MKRTFQPSVLKRKR HGFRARMATANGRKV+SRRRA+G
Sbjct:    1 MKRTFQPSVLKRKRNHGFRARMATANGRKVLSRRRARG 38
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BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: RL34_PSET1 (50S ribosomal protein L34 n=103 Tax=root TaxID=1 RepID=RL34_PSET1)

HSP 1 Score: 68.9 bits (167), Expect = 2.810e-14
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 114
            MKRTFQPSVLKRKR HGFRARMAT NGRKV++RRRAKG
Sbjct:    1 MKRTFQPSVLKRKRAHGFRARMATVNGRKVLARRRAKG 38
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BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: W7PQV9_9GAMM (50S ribosomal protein L34 n=5 Tax=Halomonas TaxID=2745 RepID=W7PQV9_9GAMM)

HSP 1 Score: 68.9 bits (167), Expect = 2.810e-14
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKG 114
            MKRTFQPSVLKRKRVHGFRARMAT NGR V+SRRRAKG
Sbjct:    1 MKRTFQPSVLKRKRVHGFRARMATKNGRAVLSRRRAKG 38
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BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Match: A0A1T1HCC4_OCELI (50S ribosomal protein L34 n=5 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1T1HCC4_OCELI)

HSP 1 Score: 68.9 bits (167), Expect = 2.810e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKGHI 120
            MKRTFQPSVLKRKR HGFRARMAT NGRK+I+RRRAKG +
Sbjct:    1 MKRTFQPSVLKRKRNHGFRARMATKNGRKIITRRRAKGRV 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig87740.20242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F9PUK3_9ZZZZ4.090e-1955.41Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A1D9GP48_9GAMM6.700e-1760.81Uncharacterized protein n=1 Tax=Marinobacter salin... [more]
RL34_MARN85.890e-1697.3750S ribosomal protein L34 n=13 Tax=Gammaproteobact... [more]
RL34_SACD22.400e-1594.7450S ribosomal protein L34 n=8 Tax=Gammaproteobacte... [more]
A0A2A9FMB9_9GAMM3.060e-1594.7450S ribosomal protein L34 n=1 Tax=Marinobacter sp.... [more]
A0A1I3B9J9_9GAMM1.970e-1492.1150S ribosomal protein L34 n=6 Tax=Halomonadaceae T... [more]
A0A2E4FF63_9GAMM1.970e-1492.1150S ribosomal protein L34 n=44 Tax=Gammaproteobact... [more]
RL34_PSET12.810e-1489.4750S ribosomal protein L34 n=103 Tax=root TaxID=1 R... [more]
W7PQV9_9GAMM2.810e-1492.1150S ribosomal protein L34 n=5 Tax=Halomonas TaxID=... [more]
A0A1T1HCC4_OCELI2.810e-1485.0050S ribosomal protein L34 n=5 Tax=Gammaproteobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig87740contigEcto-sp13_S_contig87740:3..224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score72.8
Seed ortholog evalue6.9e-11
Seed eggNOG ortholog1318628.MARLIPOL_10456
Preferred namerpmH
Model size201
KEGG koko:K02914
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
EggNOG free text desc.Belongs to the bacterial ribosomal protein bL34 family
EggNOG OGs1NGGS@1224,1SGDJ@1236,COG0230@1,COG0230@2
Cds size201
COG Functional cat.J
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464149.463542-CDS-Ecto-sp13_S_contig87740:2..881681464149.463542-CDS-Ecto-sp13_S_contig87740:2..88Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87740 3..88 -
1681464149.4751725-CDS-Ecto-sp13_S_contig87740:109..2241681464149.4751725-CDS-Ecto-sp13_S_contig87740:109..224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig87740 110..224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig87740.20242.1prot_Ecto-sp13_S_contig87740.20242.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig87740 3..224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig87740.20242.1

>prot_Ecto-sp13_S_contig87740.20242.1 ID=prot_Ecto-sp13_S_contig87740.20242.1|Name=mRNA_Ecto-sp13_S_contig87740.20242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
MKRTFQPSVLKRKRVHGFRARMATANGRKVISRRRAKGHIDRLMKALTFP
KSSRLLKPSDYGKVFDD
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mRNA from alignment at Ecto-sp13_S_contig87740:3..224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig87740.20242.1 ID=mRNA_Ecto-sp13_S_contig87740.20242.1|Name=mRNA_Ecto-sp13_S_contig87740.20242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87740:3..224- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAGAACGTTTCAACCAAGCGTACTGAAGCGTAAGCGCGTTCACGG
TTTCCGTGCCCGCATGGCAACCGCCAACGGCCGTAAGGTAATTTCCCGTC
GTCGCGCCAAGGGCCGTGCCCGTCTGTCTGCATAAGACATTGACCGCCTG
ATGAAGGCTTTGACCTTTCCAAAATCGTCCCGGCTGCTCAAGCCATCCGA
TTACGGCAAAGTCTTCGATGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig87740:3..224-

>mRNA_Ecto-sp13_S_contig87740.20242.1 ID=mRNA_Ecto-sp13_S_contig87740.20242.1|Name=mRNA_Ecto-sp13_S_contig87740.20242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig87740:3..224- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAAGAACGTTTCAACCAAGCGTACTGAAGCGTAAGCGCGTTCACGG
TTTCCGTGCCCGCATGGCAACCGCCAACGGCCGTAAGGTAATTTCCCGTC
GTCGCGCCAAGGGCCACATTGACCGCCTGATGAAGGCTTTGACCTTTCCA
AAATCGTCCCGGCTGCTCAAGCCATCCGATTACGGCAAAGTCTTCGATGA
C
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