prot_Ecto-sp13_S_contig8746.20219.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig8746.20219.1
Unique Name	prot_Ecto-sp13_S_contig8746.20219.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	221

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 421 bits (1083), Expect = 5.290e-148
Identity = 207/220 (94.09%), Postives = 213/220 (96.82%), Query Frame = 0

Query:    1 MVTSTGALVGMASWCFASCEAFIVPAPTTLSARSTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 220
            MVTSTGALVGMASWCFASCEAFIVP PTTLSAR TSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPA+FHFEEITA FPQFWA+TLLAI+WLEYRQINIGFAELDPVTGEGG+R+DYVPGDLGFDPLGLAPEDE ELNVMKTKELNHGRLAMIGI GMIVQELV+P PI G
Sbjct:   52 MVTSTGALVGMASWCFASCEAFIVPTPTTLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271

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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 284 bits (727), Expect = 1.410e-94
Identity = 143/220 (65.00%), Postives = 174/220 (79.09%), Query Frame = 0

Query:    2 VTSTGALVGMASWCFASCEAFIVP-APTTLSARSTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 220
            + +T   +G A+   AS  AF+ P A  + +  S+S+A +MSAGSDYV+TLPGAPF DGK++DP+ LS  ADP DIKKWREAEIKHGRVAMLAS+GVLVAE +HPLF+GPDYIGPAV HF+EI+A +P+FW  +LL ++++EY  I   F     VTGEGGL+ DYVPGDLGFDPL L PEDE  L+VMKTKELN+GRLAMIGIAGM+VQEL+ PA ILG
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 5.610e-92
Identity = 140/221 (63.35%), Postives = 175/221 (79.19%), Query Frame = 0

Query:    1 MVTSTGALVGMASWCFASCEAFIVP-APTTLSARSTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 220
            MV S+   +G A+   AS  AF+ P A  + +  S+++A +MSAGSDYV+TLPGAPF DGK++DP+ LS  A+P +IK WREAEIKHGRVAMLA+VGV+VAE +HPLF+GPDYIGPAV HF+EI+A FP+FWA +LL ++++EY  I   +AE  PVTGEGGLR +Y PGDLGFDPL L P+D+  L  M+TKELN+GRLAMIGIAGM+VQELV PA ILG
Sbjct:    1 MVASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 3.710e-86
Identity = 132/212 (62.26%), Postives = 164/212 (77.36%), Query Frame = 0

Query:    9 VGMASWCFASCEAFIVPAPTTLSA-RSTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPIL 219
            +G A+   AS  AF+ P     +A  S ++A +MSAGSDYV+TLPGAPF+DGK++DP+ LS  A P DIKKWREAEIKHGRVAMLAS+G+LVAE +HPLF+G D+IGPA+ HF+EI+A FP+FWA +LL ++++EY  I   F     VTGEGGL+ DY+PGDLGFDPL L P+ E  L+VMKTKELN+GRLAMIGIAGM+ QELV    IL
Sbjct:    8 LGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 1.030e-79
Identity = 128/221 (57.92%), Postives = 165/221 (74.66%), Query Frame = 0

Query:    1 MVTSTGALVGMASWCFASCEAFIVP-APTTLSARSTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 220
            M  S+   +G A+   AS  AF+ P A  + +  S+++A +MSAG+DY++TLPG   A+GK++D + L+  ADP +IK WREAEIKHGRVAMLA+VGV+VAE +HP F+GPDYIGPAV HF+EITA FPQFWA +LL ++++EY  I   +AE  PVTGEGGLR +Y PGDLGFDP  + P+D+  L  M+ KELN+GRLAMIGI GM+VQELV    ILG
Sbjct:    1 MAASSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPG---ANGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218

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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 8.920e-76
Identity = 111/161 (68.94%), Postives = 133/161 (82.61%), Query Frame = 0

Query:   60 KVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 220
            +++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GV+VAE +HP F+GPDYIGPAV HF+EI+A FP+FWA +LL ++++EY  I   F     VTGEGGL+ DY+PGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGIAGM+ QELV PA ILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196

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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 5.370e-73
Identity = 111/161 (68.94%), Postives = 133/161 (82.61%), Query Frame = 0

Query:   60 KVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 220
            +++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GV+VAE +HP F+GPDYIGPAV HF+EI+A FP+FWA +LL ++++EY  I   F     VTGEGGL+ DY+PGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGIAGM+ QELV PA ILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392

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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 7.170e-71
Identity = 107/160 (66.88%), Postives = 128/160 (80.00%), Query Frame = 0

Query:   60 KVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPIL 219
            K++DP+GL+  A+  DIK WREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPAV HF+EI+A FP+FWA +LLA++ +EY  I   +AE   VTGEGGLR +Y PGDLGFDPL L P D+  L  M+TKELN+GRLAMIGIAG +VQELV P  IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174

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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 4.040e-70
Identity = 119/225 (52.89%), Postives = 162/225 (72.00%), Query Frame = 0

Query:    1 MVTSTGALVGMASWCFASCEAFIVP--APTTLSAR-STSTAARMSAGSDYVSTLPGAPF---ADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPIL 219
            MVTS    +G A+   AS  AF+ P  AP +  AR + S+  +M+AGSDY ++LPGAPF   A+GK +DP GL++  DPE IKKWREAE+KHGRV+MLA+VG+LV+E FHPLF+GP YIGPAV H ++I   +P FW  +L  I+++E + I   +  + PVTG G L+ +Y PGDLGFDPLGLAP+D ++  +++++EL+ GR AMIG+ GMIVQE+V    IL
Sbjct:    1 MVTSQ-LFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224

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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 4.320e-68
Identity = 119/213 (55.87%), Postives = 145/213 (68.08%), Query Frame = 0

Query:    9 VGMASWCFASCEAFIVP-APTTLSARSTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 220
            +G A+   AS  AF+ P A  +++   +S   +MSAGSDYV+TLPGAPF+DGK++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GV+VAE                            FWA +LL ++++EY  I   F     VTGEGGL+ DY+PGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGIAGM+ QELV PA ILG
Sbjct:    8 IGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5B4_ECTSI	5.290e-148	94.09	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q6_ECTSI	1.410e-94	65.00	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	5.610e-92	63.35	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	3.710e-86	62.26	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	1.030e-79	57.92	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	8.920e-76	68.94	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	5.370e-73	68.94	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7Q7_ECTSI	7.170e-71	66.88	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7FQG7_ECTSI	4.040e-70	52.89	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A6H5K8D0_9PHAE	4.320e-68	55.87	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 39..219 e-value: 8.4E-39 score: 135.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 51..211 e-value: 1.5E-39 score: 136.2
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 17..217
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 17..217
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 22..220
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..21
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..21 score: 0.566
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 55..219

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8746	contig	Ecto-sp13_S_contig8746:3491..6336 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8746.20219.1	mRNA_Ecto-sp13_S_contig8746.20219.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig8746 1776..6694 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig8746.20219.1 ID=prot_Ecto-sp13_S_contig8746.20219.1|Name=mRNA_Ecto-sp13_S_contig8746.20219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MVTSTGALVGMASWCFASCEAFIVPAPTTLSARSTSTAARMSAGSDYVST
LPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVA
ENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGF
AELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLA
MIGIAGMIVQELVKPAPILG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln