mRNA_Ecto-sp13_S_contig8746.20219.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8746.20219.1
Unique NamemRNA_Ecto-sp13_S_contig8746.20219.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 428 bits (1101), Expect = 8.820e-141
Identity = 210/223 (94.17%), Postives = 216/223 (96.86%), Query Frame = 3 
Query: 1707 RCVMVTSTGALVGMASWCFASCEAFIVPAPTTLSARSTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 2375
            RCVMVTSTGALVGMASWCFASCEAFIVP PTTLSAR TSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPA+FHFEEITA FPQFWA+TLLAI+WLEYRQINIGFAELDPVTGEGG+R+DYVPGDLGFDPLGLAPEDE ELNVMKTKELNHGRLAMIGI GMIVQELV+P PI G
Sbjct:   49 RCVMVTSTGALVGMASWCFASCEAFIVPTPTTLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 1.740e-86
Identity = 143/220 (65.00%), Postives = 174/220 (79.09%), Query Frame = 3 
Query: 1719 VTSTGALVGMASWCFASCEAFIVP-APTTLSARSTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 2375
            + +T   +G A+   AS  AF+ P A  + +  S+S+A +MSAGSDYV+TLPGAPF DGK++DP+ LS  ADP DIKKWREAEIKHGRVAMLAS+GVLVAE +HPLF+GPDYIGPAV HF+EI+A +P+FW  +LL ++++EY  I   F     VTGEGGL+ DYVPGDLGFDPL L PEDE  L+VMKTKELN+GRLAMIGIAGM+VQEL+ PA ILG
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 278 bits (711), Expect = 5.260e-84
Identity = 140/221 (63.35%), Postives = 175/221 (79.19%), Query Frame = 3 
Query: 1716 MVTSTGALVGMASWCFASCEAFIVP-APTTLSARSTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 2375
            MV S+   +G A+   AS  AF+ P A  + +  S+++A +MSAGSDYV+TLPGAPF DGK++DP+ LS  A+P +IK WREAEIKHGRVAMLA+VGV+VAE +HPLF+GPDYIGPAV HF+EI+A FP+FWA +LL ++++EY  I   +AE  PVTGEGGLR +Y PGDLGFDPL L P+D+  L  M+TKELN+GRLAMIGIAGM+VQELV PA ILG
Sbjct:    1 MVASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 2.500e-78
Identity = 132/212 (62.26%), Postives = 164/212 (77.36%), Query Frame = 3 
Query: 1740 VGMASWCFASCEAFIVPAPTTLSA-RSTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPIL 2372
            +G A+   AS  AF+ P     +A  S ++A +MSAGSDYV+TLPGAPF+DGK++DP+ LS  A P DIKKWREAEIKHGRVAMLAS+G+LVAE +HPLF+G D+IGPA+ HF+EI+A FP+FWA +LL ++++EY  I   F     VTGEGGL+ DY+PGDLGFDPL L P+ E  L+VMKTKELN+GRLAMIGIAGM+ QELV    IL
Sbjct:    8 LGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 2.170e-72
Identity = 128/221 (57.92%), Postives = 165/221 (74.66%), Query Frame = 3 
Query: 1716 MVTSTGALVGMASWCFASCEAFIVP-APTTLSARSTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 2375
            M  S+   +G A+   AS  AF+ P A  + +  S+++A +MSAG+DY++TLPG   A+GK++D + L+  ADP +IK WREAEIKHGRVAMLA+VGV+VAE +HP F+GPDYIGPAV HF+EITA FPQFWA +LL ++++EY  I   +AE  PVTGEGGLR +Y PGDLGFDP  + P+D+  L  M+ KELN+GRLAMIGI GM+VQELV    ILG
Sbjct:    1 MAASSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPG---ANGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.420e-68
Identity = 111/161 (68.94%), Postives = 133/161 (82.61%), Query Frame = 3 
Query: 1893 KVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 2375
            +++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GV+VAE +HP F+GPDYIGPAV HF+EI+A FP+FWA +LL ++++EY  I   F     VTGEGGL+ DY+PGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGIAGM+ QELV PA ILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 8.480e-66
Identity = 111/161 (68.94%), Postives = 133/161 (82.61%), Query Frame = 3 
Query: 1893 KVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 2375
            +++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GV+VAE +HP F+GPDYIGPAV HF+EI+A FP+FWA +LL ++++EY  I   F     VTGEGGL+ DY+PGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGIAGM+ QELV PA ILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 4.150e-64
Identity = 120/232 (51.72%), Postives = 166/232 (71.55%), Query Frame = 3 
Query: 1716 MVTSTGALVGMASWCFASCEAFIVP--APTTLSAR-STSTAARMSAGSDYVSTLPGAPF---ADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG*VMQRL 2393
            MVTS    +G A+   AS  AF+ P  AP +  AR + S+  +M+AGSDY ++LPGAPF   A+GK +DP GL++  DPE IKKWREAE+KHGRV+MLA+VG+LV+E FHPLF+GP YIGPAV H ++I   +P FW  +L  I+++E + I   +  + PVTG G L+ +Y PGDLGFDPLGLAP+D ++  +++++EL+ GR AMIG+ GMIVQE+V    IL  ++ R+
Sbjct:    1 MVTSQ-LFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI 231
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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 5.150e-64
Identity = 107/160 (66.88%), Postives = 128/160 (80.00%), Query Frame = 3 
Query: 1893 KVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPIL 2372
            K++DP+GL+  A+  DIK WREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPAV HF+EI+A FP+FWA +LLA++ +EY  I   +AE   VTGEGGLR +Y PGDLGFDPL L P D+  L  M+TKELN+GRLAMIGIAG +VQELV P  IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
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BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 2.020e-61
Identity = 119/213 (55.87%), Postives = 145/213 (68.08%), Query Frame = 3 
Query: 1740 VGMASWCFASCEAFIVP-APTTLSARSTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGFAELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLAMIGIAGMIVQELVKPAPILG 2375
            +G A+   AS  AF+ P A  +++   +S   +MSAGSDYV+TLPGAPF+DGK++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GV+VAE                            FWA +LL ++++EY  I   F     VTGEGGL+ DY+PGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGIAGM+ QELV PA ILG
Sbjct:    8 IGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8746.20219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5B4_ECTSI8.820e-14194.17Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q6_ECTSI1.740e-8665.00Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI5.260e-8463.35Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI2.500e-7862.26Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S0_ECTSI2.170e-7257.92Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI1.420e-6868.94Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE8.480e-6668.94LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FQG7_ECTSI4.150e-6451.72Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI5.150e-6466.88Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE2.020e-6155.87LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8746contigEcto-sp13_S_contig8746:1776..6694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score427.9
Seed ortholog evalue2.8e-117
Seed eggNOG ortholog2880.D7G5B4
Model size2736
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
Exons6
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-14_006900.1
Cds size663
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8746.20219.1prot_Ecto-sp13_S_contig8746.20219.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8746 3491..6336 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464147.4064581-UTR-Ecto-sp13_S_contig8746:1775..34901681464147.4064581-UTR-Ecto-sp13_S_contig8746:1775..3490Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8746 1776..3490 +
1681464147.4875455-UTR-Ecto-sp13_S_contig8746:6336..66941681464147.4875455-UTR-Ecto-sp13_S_contig8746:6336..6694Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8746 6337..6694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464147.4205234-CDS-Ecto-sp13_S_contig8746:3490..36501681464147.4205234-CDS-Ecto-sp13_S_contig8746:3490..3650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8746 3491..3650 +
1681464147.4347553-CDS-Ecto-sp13_S_contig8746:4089..41961681464147.4347553-CDS-Ecto-sp13_S_contig8746:4089..4196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8746 4090..4196 +
1681464147.4489198-CDS-Ecto-sp13_S_contig8746:4534..45701681464147.4489198-CDS-Ecto-sp13_S_contig8746:4534..4570Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8746 4535..4570 +
1681464147.458632-CDS-Ecto-sp13_S_contig8746:5119..52031681464147.458632-CDS-Ecto-sp13_S_contig8746:5119..5203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8746 5120..5203 +
1681464147.4683113-CDS-Ecto-sp13_S_contig8746:5594..58071681464147.4683113-CDS-Ecto-sp13_S_contig8746:5594..5807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8746 5595..5807 +
1681464147.4780786-CDS-Ecto-sp13_S_contig8746:6273..63361681464147.4780786-CDS-Ecto-sp13_S_contig8746:6273..6336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8746 6274..6336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8746.20219.1

>prot_Ecto-sp13_S_contig8746.20219.1 ID=prot_Ecto-sp13_S_contig8746.20219.1|Name=mRNA_Ecto-sp13_S_contig8746.20219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MVTSTGALVGMASWCFASCEAFIVPAPTTLSARSTSTAARMSAGSDYVST
LPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVA
ENFHPLFLGPDYIGPAVFHFEEITAGFPQFWAITLLAISWLEYRQINIGF
AELDPVTGEGGLRVDYVPGDLGFDPLGLAPEDEDELNVMKTKELNHGRLA
MIGIAGMIVQELVKPAPILG*
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mRNA from alignment at Ecto-sp13_S_contig8746:1776..6694+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8746.20219.1 ID=mRNA_Ecto-sp13_S_contig8746.20219.1|Name=mRNA_Ecto-sp13_S_contig8746.20219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4919bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8746:1776..6694+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCCACTTCGCCCGCCTAACCGCCTTGCGTCTACTCCATACCGAAACTT
CGAATGCTATCTTGAAGAGGTGAGTACGAGTAGTGGTGCAGGTAACCTTT
AGGCCAAATGATCAATGTTTGAAGTATCTTTGACAATTTTGCTACAGCAG
TAGAGGGCGCATGTAGTGTCCAGATGAAGCCGATTTCAAGTCGATTCAGG
TCAACTCAAACGTCGCTATTCTGTGGGATGAGGGGTAGATCAAAGCCCGG
ACTTCGAAGGCTGCATAGAGGTGGGTAAGACCGTGAGGCCAGCATATAGC
CTAGTGAAAGTCCAACGACCCATCTCTGAAGTTGTAGTCTACTGTACTCC
TCTTCTAACGTTGGTTCTCAAAGCAGGTAGACTACATCTGCGACATGTTC
GCATGTTCGCAAGAAGCCATGACTGCAAATGTTCATGTGTGCTACAGTGT
AGCAGTTACCTACAAACACGGAGCTTCTCCATGCCAATCGGCATTGCTCA
CAGAACGACCGTAGAGCTGCAAACGACGGTTTGCTCCAACGTTGGCCTGG
GTTATCACTGGTCCTTGGTATAAGTGTAGCGCGAAAATCGAAAGCAGTCA
ACATTCCATTTTGATTATGCAGCGTACCGAGCTGATGTCAGACGGTACTG
CTGCAGTTGCCCCCATGTTCAACGCTATGACTCATGTTCTTTCGTGTTTG
TGCGACGTGGAGTACACACCCGACTCGTCCTCTCATGAGAGAGCGAGGGG
TGTTAAGAGACGGGAACCATACGGGTTGAGGGTAGAGTGCAAGTGAGGCA
GCTGGATGGAAAAGTCCTTGTACTGCTGTACGCGGGTTCGGCTTGTTCAG
CTGGCTCTATTTTGTGGCAATACCCCGAAGGTGTAGACGATAGGTCAACT
GACACGTCATCATCTAGGAGGTTTGATTCTGTGGTGGCATTGGTATTGAA
AGTTAAGGAGTTGGCGCGAGGGTTGTGACCCAGGCTGATTGGTAAAGTAC
TAGTTACCTGCACGAACGTGCACACGAGACTGGCGCCAAATATATGGGAG
GAAGACTCGAATGAAAATAGCAGTGTGTCAGCCTTGATTCGAACTCGTTT
TCCTCGGGTCTGCATGTATCCCGTCCCAACATCCGTCGTGGCCCGCTAGT
GCCGGGTGAGGCAGACATAGCACAAATCCCCAGATGTGAGTGCTGCCCCG
CTGCGTTAACTTTGACCTGTTGGCGGGTATGGTTGTATGTTTGTACGTGT
ACAAGGCTCGGGTCTCCACGGGATGACGCAAGATAAGATGCCTAACAAGT
AACATGGGTAGGTTTGTGGGTGCAATTGAGCAGCTTCATTCGTGTTCGTC
GTTGGCGGCAAGATACATGTTTCCAACGAACGGGCTGTTTGAAACCAGTT
CTCGTCTGTTCGTTTCTTGGGACCCGCGAATGGGGCGACTCTTGTGGGTG
TAAGCTTGGTTTGCCGAGCTTTCTCTTCACGGAAACCTTCCTCAGGAAAC
AGAGGCAGTCACCGCGGCTTTAATCGTCGAGCGCACATGCCACGGATGCC
TGGCGAGCTCCAGGTGCGCGCGGTAGTGCACCGACAAGAATCCATGCATG
CCCCCAGAAGGAGCACGAGAAAGAGACGATCTCGCCAGAGGAATCGAAGT
CGAAGCAACAGCAATAGCGAACTGATACATGTCCGTTCTCCCTACACCCC
CCCCATAGGTGCGTGATGGTTACTTCTACTGGTGCACTGGTGGGCATGGC
CAGTTGGTGCTTTGCTTCTTGCGAGGCCTTCATCGTGCCCGCCCCGACAA
CTCTCTCGGCTCGATCGACGTCAACCGCCGCAAGAATGTCGGCTGGCTCG
GACTACGTGTCTACACTCCCTGGAGGTGGGCAAGATAGAGACAGAAAACA
ATAACAGCGATGCTGTGAGGGATTTCTTTTCGGGGGGGAGGCATGCTCTT
GAAATTTCTACTCGAAAACCGGACCAGTCGTCGCGCCCAAGTCGACGTGT
GCCGAGGGGGCATGTGCCACGTGGACGGTGCTGTGCTCAATGATACACAC
TTCCTAGACTGCCGAGCAAGAAACGAGTCTCGTGCCACCTTGCTAGCACA
TTCAATACGATGTCCCGAATGTGGTGGAAGGAAGGTCTGCATCCATTGGA
AAATGCGTTCTCCTCAATTGTTCACGGCATCTGTTGCCGCTAGCCGCCTG
TAGGAGGACATGAGTTATTTGTCGGCGACGGCTTTCAACCTGTGAAGATA
TTGAGAATGCACTACGTCGATTCGCTCTCGCTCGCCATAAAAAACACATT
TGCTTTATTTGCAGCTCCTTTTGCGGATGGGAAAGTGTGGGATCCCGTTG
GTCTGTCATCCGAGGCCGACCCCGAAGACATCAAGAAGTGGCGTGAAGCA
GAGATCAAGCACGGGCGCGTGGTGAGAAAATGTTACTCGTACTTGGTTGT
TCTGGCAATTCCCGCGTGTGTGCAGTGCACGAGTGCTGTCTCGCTTGAAG
CCGGTGCTGCTACTGTGTCTTCTGTTAATTTTTTTTGCAGCTACTGTGTT
TCTGCTATTTTTTCTACAGATGCTAGTTCAACTGCTGTTGTTCATGCACA
TCCATGGCGTCAGCTGGTACATCTAATCCTTTTATACTTGTTTCTACGCG
ATCGTACCTTCGTCATGGCGGCAGCATGTGTTGGCGACACAGAACAACTT
CGACAATCCAACCCGCCCCTTCCCTGCCTTTCGATATTCGTTTCGCTTGC
TTTCCGCAGGCTATGCTAGCGTCCGTCGGAGTCCTCGTTGCGGAGGTGAG
CTAGGTCAACCCGCCGTCCATGGTGTTTTGCTTCCTCTAATGCTGTAGCA
GCAGTAGCCACAACCCTAGAGCTCTGTACGAGCGGCTGCTGTTGCCTCCA
TCATTAATCTCTTTCGGGAGAAGCACGCAGAAGCACTAGTTGATCTTCCA
TTTTGTTTTGTGTTCTGGAGGAGTCCCTTCAGCTTGGTTTTCTGGTCGGC
TCCCGGTGCCGGAGCAAGCTCGTGGCTTTACTGCGAACAAGCTACCCATG
AAAATGACCTTAACTTGCTCGCTTCTGCAGCTACTCTTTGCTGGCGAAAA
CGTCAATTGTCCAAGTCTGCATCCGTTTAGCGCGATAATCTGTAATTTTT
GCTCTAGATAATGCTTTTTCAGCGAATGAATTCCAGCTCCAGCCGACTCT
TGGCGGCCATGCCATACAAGTACGTGCCGGCGAGCCCGTCCGTCGCCTCT
CTCTCGCTGTGCTCTCGTGCTCTCGATGATGAAAGTGATGCACTTGTTTT
GATCGACAGCCTTCCCTACGCACACGTCCGATTTTCGCCTTCAGAATTTC
CATCCGCTGTTCCTCGGGCCCGACTACATTGGCCCCGCCGTCTTTCACTT
CGAGGAAATCACGGCGGGCTTCCCCCAGGTGCGGCAGGCAGGCAGACAAC
TGGCGGATGAACAAGAATCGTGGCGCCCAAGTATTGAAACGTTCGGCTTG
ACTGCTGCTTGGGCCACCAGGTTGAGGTTACGTTTGGTCGCCCCTCTCTT
GTGCCCGGTGGTGACGGTAGATGGGTAACTTCGGAATTTTGCGCCCGAAC
GATGCACTGCCGACTCACGAAAGGTGGACGAGAGGAACGACTACATCTGC
GCCTTTCCTCCTGCCACGGACGTGTGCATGTAGACGCCGTACACCCAACC
GGTAGACGCCTCACCATGTGGGGGGTCGTGGGCGTTTCTTGCTGTTCTTA
ACGCTAGCTTGTCGTCTTGCTGCACGTGGCCTTACATGCACCGAAAACAA
TATTGGATTGCGGCAACAGTTTTGGGCAATCACCCTGCTCGCAATTTCAT
GGCTGGAATACCGCCAAATAAACATCGGGTTTGCCGAGCTTGATCCTGTG
ACGGGAGAAGGCGGGCTACGAGTAGACTACGTTCCGGGAGACCTGGGATT
CGATCCTTTGGGGCTTGCTCCTGAAGATGAGGACGAACTCAACGTCATGA
AGACGAAGGAGCTCAACCACGGCCGCCTCGCTGTGAGTGCAACATATTGC
ATGACCGGCAGCTGTGTGGTGTTTCGTGCCAAGCTGAGCATTCGTTGGTG
GTGTGCGCAGTTGGTCGTCGTATTTGTGCAAGGCAGGCAAGTGTTGGATC
CTTGTCTGGGTGTGCACGCGCACGTCTTTTGGGGTTGTATGTTTTGTATG
GGTGAGATGGCAACAGGTGTCACATTCAGCTCACACTATGCGGGGGTTGT
CCTCAACGAGTGAGTGCCGGCGTAAACGTGCCAGGCGCTTTAGTTCTTCC
TGGAGCCTCGAAACAGAAAACGGATCACCAGCATGACGCATTCCACACGT
CTCGTAGCTTTCTCAAGGTATGGCGCTGTCGGCATGATCAGTCGCGGCAA
CGATCCTACCCTGCAATCATCCTGGATATCGTTTCCAAGTTCGCTCACCC
AAATCCCTCGTGCCCTCTCGTTGTCGAACCAAAACAATGTGCGTGTAGAT
GATTGGCATCGCCGGCATGATTGTGCAGGAACTCGTGAAGCCGGCCCCAA
TCCTTGGCTGAGTTATGCAACGGCTTTGCAGAGGCCAATCAAGGAACACC
GGAAGCTGCTGGCTTTCTCGAACCTCGTGAAATAGGCGACGATGCCGCTG
CTGGTGCTACAAGAAGCTCGGCAGATGGTATCGGATAGAATGTCGATGAG
TCATTCGTCAACACCGTGCTTCGAGCTCACGTCTTCGCCCCACAAACTTG
AGTGCGTATTTTTCCGTTGCACGGCGGTTTGGGGTCGTGTTTAGAATGTT
TCTTAAGTAGTTACAGCGTTCAGACTACCATAGAAATCGTTGCAGATGCA
TCCCTGAGACCAGGGGGGTGCAGGTACCAAGTGGGTACAATTTGCGATTC
TTTCGTTGCCGCTTGAAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8746:1776..6694+

>mRNA_Ecto-sp13_S_contig8746.20219.1 ID=mRNA_Ecto-sp13_S_contig8746.20219.1|Name=mRNA_Ecto-sp13_S_contig8746.20219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8746:1776..6694+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTACTTCTACTGGTGCACTGGTGGGCATGGCCAGTTGGTGCTTTGC
TTCTTGCGAGGCCTTCATCGTGCCCGCCCCGACAACTCTCTCGGCTCGAT
CGACGTCAACCGCCGCAAGAATGTCGGCTGGCTCGGACTACGTGTCTACA
CTCCCTGGAGCTCCTTTTGCGGATGGGAAAGTGTGGGATCCCGTTGGTCT
GTCATCCGAGGCCGACCCCGAAGACATCAAGAAGTGGCGTGAAGCAGAGA
TCAAGCACGGGCGCGTGGCTATGCTAGCGTCCGTCGGAGTCCTCGTTGCG
GAGAATTTCCATCCGCTGTTCCTCGGGCCCGACTACATTGGCCCCGCCGT
CTTTCACTTCGAGGAAATCACGGCGGGCTTCCCCCAGTTTTGGGCAATCA
CCCTGCTCGCAATTTCATGGCTGGAATACCGCCAAATAAACATCGGGTTT
GCCGAGCTTGATCCTGTGACGGGAGAAGGCGGGCTACGAGTAGACTACGT
TCCGGGAGACCTGGGATTCGATCCTTTGGGGCTTGCTCCTGAAGATGAGG
ACGAACTCAACGTCATGAAGACGAAGGAGCTCAACCACGGCCGCCTCGCT
ATGATTGGCATCGCCGGCATGATTGTGCAGGAACTCGTGAAGCCGGCCCC
AATCCTTGGCTGA
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