prot_Ecto-sp13_S_contig8741.20210.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8741.20210.1
Unique Nameprot_Ecto-sp13_S_contig8741.20210.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length313
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8741.20210.1 vs. uniprot
Match: D8LIR6_ECTSI (Myb-like DNA-binding domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIR6_ECTSI)

HSP 1 Score: 473 bits (1217), Expect = 1.140e-159
Identity = 259/313 (82.75%), Postives = 269/313 (85.94%), Query Frame = 0 
Query:    1 MAGDRAQAMTAIALENLSNDPDLDESLAGGTALAYGGPVPRVPSRSKRAAVAGGXXXXXXXXXGRILPRAGLPSPSIPGSPISSSNPGRDXXXXXXXXXXXXXKSGPVVLLQGARAEAAKKALALNLKLQTALRKELRVVDESLQRNREILKTAEERLSSRRCMGITTSTEKFRWSKAVSKFLSVNGHPGKLGLHKEQEAMLRSDPIPWQSRDIKALLDHISAEYPEAVNPVTAEEARRKIDWEKAARSVDQTTHRSIKRQRLRRVRTAEECRLRWTHVDIAGATTDTTWSKEEDLAIMVQADERGAREWVKV 313
            MAGDRAQAMTA ALENLSNDPDLDESLA G ALAYGGPVPRVPSR+KRAAVAGG                 LP  S  G+P SS  PGRD    XXXX     K GPVVLL+GARAEAAKKALALNLKLQTALRKEL VVDESLQRN+EILKTAEERLSSRRCMGITTSTEKFRWSKAVSKFLSVNGHPGKLGLHKEQEAMLRSDPIPWQSRD+KALL+HISAEYP+AV+PVTAEE  RKIDWEKAA SVDQTTHR IKRQRLRRVRTAEECRLRWTHVD+ GATT TTWSKEEDLAIMVQADERGAREWVK+
Sbjct:    1 MAGDRAQAMTARALENLSNDPDLDESLASGAALAYGGPVPRVPSRAKRAAVAGGGA-------------GSLPGTSTAGAPRSSPRPGRDRAVPXXXXPRPPPKRGPVVLLRGARAEAAKKALALNLKLQTALRKELSVVDESLQRNKEILKTAEERLSSRRCMGITTSTEKFRWSKAVSKFLSVNGHPGKLGLHKEQEAMLRSDPIPWQSRDVKALLNHISAEYPDAVSPVTAEETLRKIDWEKAALSVDQTTHRGIKRQRLRRVRTAEECRLRWTHVDMPGATTGTTWSKEEDLAIMVQADERGAREWVKI 300
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8741.20210.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIR6_ECTSI1.140e-15982.75Myb-like DNA-binding domain containing protein n=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8741contigEcto-sp13_S_contig8741:244..6690 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8741.20210.1mRNA_Ecto-sp13_S_contig8741.20210.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8741 244..6690 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8741.20210.1 ID=prot_Ecto-sp13_S_contig8741.20210.1|Name=mRNA_Ecto-sp13_S_contig8741.20210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=313bp
MAGDRAQAMTAIALENLSNDPDLDESLAGGTALAYGGPVPRVPSRSKRAA
VAGGGAGAGGGGAGRILPRAGLPSPSIPGSPISSSNPGRDRDAPAPPRPR
PPPKSGPVVLLQGARAEAAKKALALNLKLQTALRKELRVVDESLQRNREI
LKTAEERLSSRRCMGITTSTEKFRWSKAVSKFLSVNGHPGKLGLHKEQEA
MLRSDPIPWQSRDIKALLDHISAEYPEAVNPVTAEEARRKIDWEKAARSV
DQTTHRSIKRQRLRRVRTAEECRLRWTHVDIAGATTDTTWSKEEDLAIMV
QADERGAREWVKV
back to top