mRNA_Ecto-sp13_S_contig8741.20210.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8741.20210.1
Unique NamemRNA_Ecto-sp13_S_contig8741.20210.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8741.20210.1 vs. uniprot
Match: D8LIR6_ECTSI (Myb-like DNA-binding domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIR6_ECTSI)

HSP 1 Score: 473 bits (1217), Expect = 1.140e-159
Identity = 259/313 (82.75%), Postives = 269/313 (85.94%), Query Frame = 1 
Query:    1 MAGDRAQAMTAIALENLSNDPDLDESLAGGTALAYGGPVPRVPSRSKRAAVAGGXXXXXXXXXGRILPRAGLPSPSIPGSPISSSNPGRDXXXXXXXXXXXXXKSGPVVLLQGARAEAAKKALALNLKLQTALRKELRVVDESLQRNREILKTAEERLSSRRCMGITTSTEKFRWSKAVSKFLSVNGHPGKLGLHKEQEAMLRSDPIPWQSRDIKALLDHISAEYPEAVNPVTAEEARRKIDWEKAARSVDQTTHRSIKRQRLRRVRTAEECRLRWTHVDIAGATTDTTWSKEEDLAIMVQADERGAREWVKV 939
            MAGDRAQAMTA ALENLSNDPDLDESLA G ALAYGGPVPRVPSR+KRAAVAGG                 LP  S  G+P SS  PGRD    XXXX     K GPVVLL+GARAEAAKKALALNLKLQTALRKEL VVDESLQRN+EILKTAEERLSSRRCMGITTSTEKFRWSKAVSKFLSVNGHPGKLGLHKEQEAMLRSDPIPWQSRD+KALL+HISAEYP+AV+PVTAEE  RKIDWEKAA SVDQTTHR IKRQRLRRVRTAEECRLRWTHVD+ GATT TTWSKEEDLAIMVQADERGAREWVK+
Sbjct:    1 MAGDRAQAMTARALENLSNDPDLDESLASGAALAYGGPVPRVPSRAKRAAVAGGGA-------------GSLPGTSTAGAPRSSPRPGRDRAVPXXXXPRPPPKRGPVVLLRGARAEAAKKALALNLKLQTALRKELSVVDESLQRNKEILKTAEERLSSRRCMGITTSTEKFRWSKAVSKFLSVNGHPGKLGLHKEQEAMLRSDPIPWQSRDVKALLNHISAEYPDAVSPVTAEETLRKIDWEKAALSVDQTTHRGIKRQRLRRVRTAEECRLRWTHVDMPGATTGTTWSKEEDLAIMVQADERGAREWVKI 300
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8741.20210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIR6_ECTSI1.140e-15982.75Myb-like DNA-binding domain containing protein n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8741contigEcto-sp13_S_contig8741:244..6690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score475.7
Seed ortholog evalue1.7e-131
Seed eggNOG ortholog2880.D8LIR6
Model size939
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Cds size939
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464146.839129-CDS-Ecto-sp13_S_contig8741:243..4661681464146.839129-CDS-Ecto-sp13_S_contig8741:243..466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8741 244..466 +
1681464146.8543427-CDS-Ecto-sp13_S_contig8741:535..7591681464146.8543427-CDS-Ecto-sp13_S_contig8741:535..759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8741 536..759 +
1681464146.8656008-CDS-Ecto-sp13_S_contig8741:5135..53331681464146.8656008-CDS-Ecto-sp13_S_contig8741:5135..5333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8741 5136..5333 +
1681464146.8761585-CDS-Ecto-sp13_S_contig8741:6002..61811681464146.8761585-CDS-Ecto-sp13_S_contig8741:6002..6181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8741 6003..6181 +
1681464146.8863277-CDS-Ecto-sp13_S_contig8741:6575..66901681464146.8863277-CDS-Ecto-sp13_S_contig8741:6575..6690Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8741 6576..6690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8741.20210.1prot_Ecto-sp13_S_contig8741.20210.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8741 244..6690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8741.20210.1

>prot_Ecto-sp13_S_contig8741.20210.1 ID=prot_Ecto-sp13_S_contig8741.20210.1|Name=mRNA_Ecto-sp13_S_contig8741.20210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=313bp
MAGDRAQAMTAIALENLSNDPDLDESLAGGTALAYGGPVPRVPSRSKRAA
VAGGGAGAGGGGAGRILPRAGLPSPSIPGSPISSSNPGRDRDAPAPPRPR
PPPKSGPVVLLQGARAEAAKKALALNLKLQTALRKELRVVDESLQRNREI
LKTAEERLSSRRCMGITTSTEKFRWSKAVSKFLSVNGHPGKLGLHKEQEA
MLRSDPIPWQSRDIKALLDHISAEYPEAVNPVTAEEARRKIDWEKAARSV
DQTTHRSIKRQRLRRVRTAEECRLRWTHVDIAGATTDTTWSKEEDLAIMV
QADERGAREWVKV
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mRNA from alignment at Ecto-sp13_S_contig8741:244..6690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8741.20210.1 ID=mRNA_Ecto-sp13_S_contig8741.20210.1|Name=mRNA_Ecto-sp13_S_contig8741.20210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8741:244..6690+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGGCGACCGAGCCCAGGCTATGACGGCCATAGCTCTGGAAAACCT
TTCCAACGACCCGGATTTAGATGAATCGTTGGCCGGCGGTACTGCTCTTG
CGTATGGTGGCCCCGTCCCGCGAGTGCCCAGCCGCTCTAAGAGAGCTGCT
GTTGCAGGAGGAGGAGCAGGAGCAGGAGGAGGAGGGGCTGGGAGGATCCT
ACCTCGCGCAGGATTGCCATCGCGTCGAGGAGGAGGAGGGCCCTCCATCC
CTCCAACACGAAGGAGTGTCGCAGCAAGGTCCTTGGCAGAAGCATCAATC
CCAGGTTCCCCGATATCATCGTCAAATCCGGGTAGAGATCGCGATGCTCC
TGCCCCTCCCCGGCCGCGACCGCCTCCGAAAAGCGGGCCCGTCGTGCTGC
TACAGGGAGCCCGGGCGGAGGCAGCAAAGAAGGCCCTCGCGCTGAACCTC
AAGCTCCAGACGGCTCTGCGGAAGGAGCTCAGGGTCGTGGACGAGTCCTT
GCAACGAAACAGAGAGGTGTGTTTTGTTTTTGTCTTGGCCGGGAGAGAAA
CACTGGTCTATTTAGCGTGAACGCCCTCAGTCGGGTGTGCCAAAAAGAGG
CTGAGATTGATTGTGTCTCGACAAAAGCTTGAAAATCAGCAAGATACCGC
TCAAGACACCCCGGCTCAGCTGTTAGTGCTATCTACATACACCTGGTCAA
ATCCCACTGAGGGATGTGTTGTACAGAAATCCACAAGTTTGCAGGCATAG
ACATTTACCACAGAGTGGCGTGCGTCGCTTTCTATCTTCTATCTTTCTCA
TGCTCGCCCGGAGGCGTCAGGGTTGGCATGCTAGTGGGTGTACGGTGTGC
CCTGGGGTTCTTCACCTTCTCTCCGAACGCCTGTAATTTCCTCAACAATC
AGTGGCTGATGTATACCCCGGTCTGTCCTCTTTCGTTCCTCTTTTCAACC
AGTTTGGTGAATCCAGGGTCTCACAGAAAGGTCTACTGTATACATGTGAC
CCCCCCCCCCATCTGCGGCCCATGCGTTCTATTTTACGTTACCGACCAGA
TGGCTGCATGAGGGAGGCGCTTGATTCCCAACCGCATCTGCATATTGTGA
TTGATTGTGATAGCAACTCGACGAGTATCGTTGCGCGGCCTGTCTGAAGC
ATTCCAGTTTTTGAGCGATTAATAAAGCCGAGGGCGTACACCGCGACACG
ATCGCCCACCGAGCACGAGAAAGAGTCCTGTACATAAGAGTAGATGACAT
AAGATATCACGCCCCCTGAACAGTTTATAATCTTCAAAGCTCGATTATAC
TCCACAGCAGAAAGCGTGGCCGGGCGGCGTTGGCACCGATAGCGTTCCGA
GACAAACCTATCGTTTGATATCCTCGTCGTCGTGGACTGACATGATTAGC
TGTGAATATTGATGATGCGATATATTGTGTCACCTACTGCCGGTACATGC
CATGCATGAGAAAAAGGAGCACCCTCCATACTCCTATAAGTTATTGAGGT
AGTAAAATGAAACCTCTCATCACCCATCCATGAAGAAGTTGTTGTATTCA
CGAAAACTTCATAAGTGCTGCAAAAACTATCCATGGACGAACCGAGCGTT
CTGTTATTTATACCTCTCCTTCGTCTGTCCGTACTATTATATTATGTTTG
ACAGTCTGAAACTTGACGCGGTCGATTCCCGCCCGTGGTCACAGGCTTAT
TTACCCAAAAAAGTGATACGAAAATAAAATGGACTTGAAGAAGGGTCCGT
AAGTCAACGACAGATTAGTCTAGGACCCTCCACTTTCAATACGTTATGCG
AGGTAATCATAGACTAGACAATAAAGAAAAAAAAACGAAAGCATATTAGA
GGCGACCTTACGCGTACCCGAAAAAACCGCGTCAGTCTTCGACCGGCACT
TCACACTACGCCCATCCATGCGCATGCACTTTTTTGTGGCGAGGGACTCC
ATGTTTTCAAGAATGACGCCAATCATCTCGTTGATCTGTTTCTTTATTTT
ACAAACATGTAGTGCGCACGTCACACCCGAATGAAAAGGAGACCACACCA
AAACGCGCTCTTCGCACGCTGGGAAAGAATCCGGGACTACATGAATAATG
CGGACCTCAGAAAATGCACTTTTCACAGTAGGTTTCCTCTCCGACACGAA
AGAACCGGACGGGAGAGAGGGTAAAAAGAAAAAAAGCAGAGGCGTAGTAT
GCGTTCGCCGTCATGGACATTTCATAATAAGAGTCGTATTGTGGTAGTGG
CAGGAACCTCTCTCTGTGATCAGGTCAGAAGGCCACCAGTTGCCGGGGCT
CTTCTGTTACACCCACCTATGAATGCAGCAGTAGTAGCGCATGTCCTGTA
GTAGACAACTACTACTGCTAAAAATATGGGAGACCACGAACTATACCGAC
AGGTGGGTCTTTTGTGGGCGGGGGACCCTAAGAATCAGTCAGACTCAGCC
AGTTTACATCCTCACAGTTTCTTGCAAGCAAGAACGAAGGGCGATCAAAA
CAGAGAGGCCACCAGCGACAGAAAAAAATGTAGAGGAGCGCAGAGCTAAG
AAACAAGTGGAGAAACAAGGCCCCCTTGCCGCTCTGACCCACTGGAAGCT
TTCCAAGTACCGCAACAAACAGCAGGGGCAGCACCCACTACTACCTCACT
TGCAGTAGCCGGGTACACGGACTGACTAGTACGTAGTAGAGTTGTAGTCT
CTTTCTCCGGCAAGAACTATAACGCCCGGGCGAACTTGATCCTTGTAGTC
ACAAGAAAAAGCGTCATGATGACGTACTTCATTCTGCTTGCCGTGGGAGA
TGCGCATCGTCACGCGAGCACGTCGTCAACTCCTCGCATAGAATATGCTG
CCGTAGACCCTATCCCTCAACCGTCAACTACAGCTATACCCGATACATGG
TAGTATCATATCCAGCTGTAGAAGAATCGAAAATATACTGTTTTCTTGTT
GGCGACGCGGACCCTCTTTTGTGACTCTCCAACTGCTGTTCGTGGATGGC
GACATGGCGACACAGGCAGACAAAATCTAGGGTTTGACGTCGGCCTTATG
CGCCGCAGGAGATGGGATCTTTACTCAAAGTCGGGGAGGGATTGTGGTTT
GCAATTCCCCACGAAACCGTACTTGACGCGCCATGAGATTGGCACGGCCG
TAGCCGAGGTTATTAGTCGGCAGGGAAATACAAAAAACAAAATCTTCGGC
GGACCGGACAACCGGACCCTCTTTTCTTCAACTGGCCAACTGTTGTTTGG
ATGGCGAGACTATTTCCGGTCTTCTTGTCCGTCACAGGAGGCCGAAGCTG
ATGCTCAATCTCGGTGAGGGGCATGGTTTGTGATTCCTTACCGAACCATA
CTCGCTCGGGGCACCACGTCATCAACATGACAAGAAAAACACCCCCCAAC
GAAAACTGCTGAAATTCATGGATGGGTGGGTGAGTGGGGGACCCCACAAT
GAAACAGTCGCGGTTCGCGTTGTTCTGGGGCCCTACAGGCGAAGAACACC
GTCGCCGCTCTGAACTGCTGGAAGCTGCCACACAGCACTGCATGTGCGGC
GAACTGTAGGGGCCATGCGCATTGCTTAACGGAAAGAAGCGGCGCCCATC
GCCTCACATGCAGCAGCCGGGTACACGGGTAGCCTCCTACGCAAGATGCA
AAACGATTACCCCTGACCTTCGATGTTATTGGGACCCTAACGGCGAAAAT
GCAACAGAGAGAGAGAGGTAGACTAAAGGAACAGAGACTCGAGAAGAAAA
GGCATGAACTCACGAGAAGACACTCGCTCTCATTCCTCTGGCCCACCGCA
GGCTTGAACACGTGTAACGAACGGCGACGTCCGATGTGCGCTCAGCAACA
ACAAACACGACAAGAGAAGAATAGTCGTCGCTTCTGAACTGCTGTGGAGA
TACTGTAAGTTGATGGAGACTTTCTTTCTTTTCTGGTATGAAGTGGCAAC
AAGGAAGAACACGACTATCTGTGTAGACTAAAAGCACGACGGACAAACTA
TTATCTCAATGCGCTTGCCGCCGCGATAGATGCGCACCGCCACCGCGATA
CGAACGAGCAGACTGTTGTCAAACCTGACTACGATAACCGTACGGCCATT
GCAGCACATGCAGCACATTCCAAGCATAACGGCAGCAACCGCAGCAGCAG
CAGCCGCATGTGTACAACGAACGGTCACTCAAGAACAAAAAAAAAAGGTG
GCGCGCAGCACGCAGGACCCTCTTTCGCTGTTCAACCGGCCGTGCCCATG
GCGAAACAGGCAAGGAACAGTCAAGGCCGACTCTTGCCGGCCACAGGAGG
CGGAAGCTGCTCAAACTCGGGGACGGCCAATGATTTGCGATCCCACACCG
AACCATACTCGAGGCGCCACGAGATTTGCACTGTAGATCGAGATCAGCAT
TCTAGACAGGGTCGGGCAAGGGGTGGGGCATGCGAATGAAACTTCCACGG
ACATTGAACGATGAGACTAAAGCTGCAGCTTCAGAATTTCCATGCACGCG
GTAAAACAAAGTGTTAGGGTGGTTTTTTGAAGCGATACACTTGTGCATCT
AGGGCGAGAGGGGAAAGTACAGTGACACGTCCATTCAGTCTGCTTCTGGG
AAAGACCAGAAGTATCGCGTTTGCACGTCACCATCCATCCATCACCTCCG
GCTCTGTTTTTTTGTTCGTGCCCTTGCCATTGTCCTGTACTTTGGCTATC
GCTTTGTTTCTCTCGATCCCCACGCACATTACTTCGGCGATTATGATTCA
TAGAGTTTGTGGTTAGTTTATGACCCATGGCACGCCTGTGCTGCTACTGG
CATTTCACAACTCCAAACAAATGTAATACTGCTGTTCGTTCGTTCTTTGT
TCCCTCCCTTTATATGTTTAAATATATTTTCTCCTACGTCAGATTCTGAA
GACCGCCGAGGAACGGCTGTCCTCCCGGAGGTGCATGGGCATCACCACCA
GCACCGAGAAGTTCAGGTGGTCCAAGGCCGTCAGCAAGTTCCTCTCGGTC
AACGGACACCCGGGGAAGCTTGGCCTCCACAAGGAACAGGAGGCCATGCT
CCGCAGCGATCCCATCCCATGGCAGAGCCGGGATATCAAGGTGTGAGCGG
CAACAACCGAATAGGGATAGTATGCATACCATGCCGTAAGGACAAGAAGG
TTCGGTTCGGACAGTAGGGGTGTCAAGCGGTTTGGGTGGTTGTTTTGGAG
AGGTCTCGTCGAGAGCTCGATGGTGTACGACAGAACACAACACTCGGGGG
GTATGCTACGACGTGGTAGTGTTGGAGTCTTGTCCTCTTGCGAATACTTA
AAGTTAAACAGTCCGGACCCTGTCCTGCACGTCCCTCCCACAGTGGAAGC
TTGATGACTCGAAAGCGTGTTCGCTTTCCTTATCTCGCACAAGACTGACG
TATTTTCATGCGTCAGCTGATTAGCGTGGTTCCAGAACACTTCACACACA
CGGAAATCGACTTGAAAAACAAGCTGACTTTGAGTTGCTGGGGATTAGTC
CCGCAGACTCCCCCAAAGCACCCGACTGTGTGGAACGAGTCCCATTTCCG
CGTCCTGCCCGTCGAAGCGCTCGTCACACATGACACGAAGCTGCCCACCC
GCACCCGATTGCCCACGGGTGATCGGACCTGTGAGAGCAATGCTCCGTCC
TCTCGAGAACGCCTGGTCAATGGTCTAACCACTAAGGCGCGCAAAACACA
AGACTACACCCCACACCCCACCCGTTCACCAACACCAACCATGAACACGT
AAAAAACAGGCCCTGCTGGACCACATTTCCGCGGAGTATCCTGAGGCGGT
TAACCCCGTCACCGCCGAGGAGGCCCGCCGCAAGATCGACTGGGAGAAGG
CGGCCCGCTCGGTTGACCAGACCACACATCGAAGCATCAAGCGCCAGCGA
TTGCGCCGCGTCCGCACGGCCGAGGAGTGCCGCTTGAGGTGAAGGGGGGG
GGGGGGTGTGCACAAGTGCGAGCACGAGAAATTACGTGTGTTCTTTGTGT
TGATTGATGTTTCTGATGCGTGTACTTCTATTTTGTAATTTTTGCAAGAT
CATGAACGTGGTGAGAACTGTGTACCCATTTTTCTGTTTGTTCGCTCGTG
TTTATCTTGTCTCATACGATATCTGTTTTGCGATCTTTTGGGATCGTTTG
CGCTTTGCCGCGTGTTTGTGTCGTGCGTGATCATGAACAGGAACGCTCTT
TTTCTCGTGTGACGCTGCTCTGTTCCCTCGGCAAGCGTGCCGTCAGCCAC
GGAAACGTACAAGAATGTACTTCTATTCTCACAACAATTTTTGAAGATAA
TTACGAGGACGAAATGTTGACAAACATGTCAGGTGGACTCACGTCGACAT
AGCCGGAGCCACAACCGATACCACGTGGTCCAAGGAAGAGGACTTGGCCA
TCATGGTGCAGGCCGATGAACGTGGCGCCAGGGAGTGGGTCAAGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8741:244..6690+

>mRNA_Ecto-sp13_S_contig8741.20210.1 ID=mRNA_Ecto-sp13_S_contig8741.20210.1|Name=mRNA_Ecto-sp13_S_contig8741.20210.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8741:244..6690+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGGCGACCGAGCCCAGGCTATGACGGCCATAGCTCTGGAAAACCT
TTCCAACGACCCGGATTTAGATGAATCGTTGGCCGGCGGTACTGCTCTTG
CGTATGGTGGCCCCGTCCCGCGAGTGCCCAGCCGCTCTAAGAGAGCTGCT
GTTGCAGGAGGAGGAGCAGGAGCAGGAGGAGGAGGGGCTGGGAGGATCCT
ACCTCGCGCAGGATTGCCATCGCCATCAATCCCAGGTTCCCCGATATCAT
CGTCAAATCCGGGTAGAGATCGCGATGCTCCTGCCCCTCCCCGGCCGCGA
CCGCCTCCGAAAAGCGGGCCCGTCGTGCTGCTACAGGGAGCCCGGGCGGA
GGCAGCAAAGAAGGCCCTCGCGCTGAACCTCAAGCTCCAGACGGCTCTGC
GGAAGGAGCTCAGGGTCGTGGACGAGTCCTTGCAACGAAACAGAGAGATT
CTGAAGACCGCCGAGGAACGGCTGTCCTCCCGGAGGTGCATGGGCATCAC
CACCAGCACCGAGAAGTTCAGGTGGTCCAAGGCCGTCAGCAAGTTCCTCT
CGGTCAACGGACACCCGGGGAAGCTTGGCCTCCACAAGGAACAGGAGGCC
ATGCTCCGCAGCGATCCCATCCCATGGCAGAGCCGGGATATCAAGGCCCT
GCTGGACCACATTTCCGCGGAGTATCCTGAGGCGGTTAACCCCGTCACCG
CCGAGGAGGCCCGCCGCAAGATCGACTGGGAGAAGGCGGCCCGCTCGGTT
GACCAGACCACACATCGAAGCATCAAGCGCCAGCGATTGCGCCGCGTCCG
CACGGCCGAGGAGTGCCGCTTGAGGTGGACTCACGTCGACATAGCCGGAG
CCACAACCGATACCACGTGGTCCAAGGAAGAGGACTTGGCCATCATGGTG
CAGGCCGATGAACGTGGCGCCAGGGAGTGGGTCAAGGTC
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