prot_Ecto-sp13_S_contig8701.20167.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8701.20167.1
Unique Nameprot_Ecto-sp13_S_contig8701.20167.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length237
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8701.20167.1 vs. uniprot
Match: A0A6H5JHA9_9PHAE (DNL-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA9_9PHAE)

HSP 1 Score: 399 bits (1025), Expect = 5.970e-139
Identity = 215/268 (80.22%), Postives = 221/268 (82.46%), Query Frame = 0 
Query:    1 MKAIQCAPVLLCAMAVDSFHVPVPLSTISRSVVPCSVRQHQLLLLSAKRRGEGIEPEEPLFEGPILLPPADYTKPGRVVNLQGDDDGAEVGHVMLNRKITLSFTCNVCDGHNTHQ------------------------------LDFPEFGRNLEEFMAKKGTPVKRVVMDRDGLSHVQVAVPGKDYPEVNPHLVTRDEDEEEALREGFDAMSLLPGAHVGGAGYLPGVPPXXXX--LREEVGGAGDGEDVVDGEWEEDVVDGPPDV 236
            M+AIQ A VLLC MAV SFHVP+PLS ISRS+VPCS RQH LLLLSA+RRG GIEPEEPLFEGPILLPPADYTKPGRVVNL GDDDGAEVGHVMLNRKITLSFTCNVCDGHNTHQ                              LDFPEFGRNLEEFMAKKGTPVKRVVMDRDGLSHVQVAVPGKDYPEVNPH VTRDEDEEEALREGFDAMSLLP AHVGGA YL GVP XXXX  LR+EVGGAGDGEDVVDGEWE DVVDGPP+V
Sbjct:    1 MQAIQYALVLLCTMAVGSFHVPLPLSVISRSIVPCSARQHHLLLLSAERRGRGIEPEEPLFEGPILLPPADYTKPGRVVNL-GDDDGAEVGHVMLNRKITLSFTCNVCDGHNTHQINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTPVKRVVMDRDGLSHVQVAVPGKDYPEVNPHQVTRDEDEEEALREGFDAMSLLPSAHVGGADYLRGVPXXXXXXXLRQEVGGAGDGEDVVDGEWEGDVVDGPPNV 267
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BLAST of mRNA_Ecto-sp13_S_contig8701.20167.1 vs. uniprot
Match: D7G2G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G4_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 4.830e-91
Identity = 136/143 (95.10%), Postives = 138/143 (96.50%), Query Frame = 0 
Query:   94 MLNRKITLSFTCNVCDGHNTHQLDFPEFGRNLEEFMAKKGTPVKRVVMDRDGLSHVQVAVPGKDYPEVNPHLVTRDEDEEEALREGFDAMSLLPGAHVGGAGYLPGVPPXXXXLREEVGGAGDGEDVVDGEWEEDVVDGPPDV 236
            MLNRKITLSFTCNVCDGHNTHQLDFPEFGRNLEEFMAKKGTPVKRVVMD  GLSHVQV VPGKDYPEVNPHLVT DEDEEEAL EGFDAMSLLPGAHVGGAGYLPGVPPXXXXLR+EVGGAGDGEDVVDG+WEEDVVDGPPDV
Sbjct:    1 MLNRKITLSFTCNVCDGHNTHQLDFPEFGRNLEEFMAKKGTPVKRVVMDGHGLSHVQVPVPGKDYPEVNPHLVTGDEDEEEALHEGFDAMSLLPGAHVGGAGYLPGVPPXXXXLRQEVGGAGDGEDVVDGDWEEDVVDGPPDV 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8701.20167.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHA9_9PHAE5.970e-13980.22DNL-type domain-containing protein n=1 Tax=Ectocar... [more]
D7G2G4_ECTSI4.830e-9195.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..236
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8701contigEcto-sp13_S_contig8701:803..5152 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8701.20167.1mRNA_Ecto-sp13_S_contig8701.20167.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8701 803..5963 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8701.20167.1 ID=prot_Ecto-sp13_S_contig8701.20167.1|Name=mRNA_Ecto-sp13_S_contig8701.20167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
MKAIQCAPVLLCAMAVDSFHVPVPLSTISRSVVPCSVRQHQLLLLSAKRR
GEGIEPEEPLFEGPILLPPADYTKPGRVVNLQGDDDGAEVGHVMLNRKIT
LSFTCNVCDGHNTHQLDFPEFGRNLEEFMAKKGTPVKRVVMDRDGLSHVQ
VAVPGKDYPEVNPHLVTRDEDEEEALREGFDAMSLLPGAHVGGAGYLPGV
PPPPPPLREEVGGAGDGEDVVDGEWEEDVVDGPPDV*
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