mRNA_Ecto-sp13_S_contig8701.20167.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8701.20167.1
Unique NamemRNA_Ecto-sp13_S_contig8701.20167.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8701.20167.1 vs. uniprot
Match: A0A6H5JHA9_9PHAE (DNL-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA9_9PHAE)

HSP 1 Score: 401 bits (1030), Expect = 2.190e-135
Identity = 215/268 (80.22%), Postives = 221/268 (82.46%), Query Frame = 1 
Query:    1 MKAIQCAPVLLCAMAVDSFHVPVPLSTISRSVVPCSVRQHQLLLLSAKRRGEGIEPEEPLFEGPILLPPADYTKPGRVVNLQGDDDGAEVGHVMLNRKITLSFTCNVCDGHNTHQ------------------------------LDFPEFGRNLEEFMAKKGTPVKRVVMDRDGLSHVQVAVPGKDYPEVNPHLVTRDEDEEEALREGFDAMSLLPGAHVGGAGYLPGVPPXXXX--LREEVGGAGDGEDVVDGEWEEDVVDGPPDV 708
            M+AIQ A VLLC MAV SFHVP+PLS ISRS+VPCS RQH LLLLSA+RRG GIEPEEPLFEGPILLPPADYTKPGRVVNL GDDDGAEVGHVMLNRKITLSFTCNVCDGHNTHQ                              LDFPEFGRNLEEFMAKKGTPVKRVVMDRDGLSHVQVAVPGKDYPEVNPH VTRDEDEEEALREGFDAMSLLP AHVGGA YL GVP XXXX  LR+EVGGAGDGEDVVDGEWE DVVDGPP+V
Sbjct:    1 MQAIQYALVLLCTMAVGSFHVPLPLSVISRSIVPCSARQHHLLLLSAERRGRGIEPEEPLFEGPILLPPADYTKPGRVVNL-GDDDGAEVGHVMLNRKITLSFTCNVCDGHNTHQINRVSFMQGIVVLWCQHCNQKHLIADNLGKLDFPEFGRNLEEFMAKKGTPVKRVVMDRDGLSHVQVAVPGKDYPEVNPHQVTRDEDEEEALREGFDAMSLLPSAHVGGADYLRGVPXXXXXXXLRQEVGGAGDGEDVVDGEWEGDVVDGPPNV 267
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BLAST of mRNA_Ecto-sp13_S_contig8701.20167.1 vs. uniprot
Match: D7G2G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G4_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 6.720e-88
Identity = 136/143 (95.10%), Postives = 138/143 (96.50%), Query Frame = 1 
Query:  280 MLNRKITLSFTCNVCDGHNTHQLDFPEFGRNLEEFMAKKGTPVKRVVMDRDGLSHVQVAVPGKDYPEVNPHLVTRDEDEEEALREGFDAMSLLPGAHVGGAGYLPGVPPXXXXLREEVGGAGDGEDVVDGEWEEDVVDGPPDV 708
            MLNRKITLSFTCNVCDGHNTHQLDFPEFGRNLEEFMAKKGTPVKRVVMD  GLSHVQV VPGKDYPEVNPHLVT DEDEEEAL EGFDAMSLLPGAHVGGAGYLPGVPPXXXXLR+EVGGAGDGEDVVDG+WEEDVVDGPPDV
Sbjct:    1 MLNRKITLSFTCNVCDGHNTHQLDFPEFGRNLEEFMAKKGTPVKRVVMDGHGLSHVQVPVPGKDYPEVNPHLVTGDEDEEEALHEGFDAMSLLPGAHVGGAGYLPGVPPXXXXLRQEVGGAGDGEDVVDGDWEEDVVDGPPDV 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8701.20167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHA9_9PHAE2.190e-13580.22DNL-type domain-containing protein n=1 Tax=Ectocar... [more]
D7G2G4_ECTSI6.720e-8895.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8701contigEcto-sp13_S_contig8701:803..5963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1522
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_001360.1
Cds size711
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.3246784-CDS-Ecto-sp13_S_contig8701:802..10451681464143.3246784-CDS-Ecto-sp13_S_contig8701:802..1045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8701 803..1045 +
1681464143.3471131-CDS-Ecto-sp13_S_contig8701:2862..29641681464143.3471131-CDS-Ecto-sp13_S_contig8701:2862..2964Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8701 2863..2964 +
1681464143.3579407-CDS-Ecto-sp13_S_contig8701:4786..51521681464143.3579407-CDS-Ecto-sp13_S_contig8701:4786..5152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8701 4787..5152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.3735142-UTR-Ecto-sp13_S_contig8701:5152..59631681464143.3735142-UTR-Ecto-sp13_S_contig8701:5152..5963Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8701 5153..5963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8701.20167.1prot_Ecto-sp13_S_contig8701.20167.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8701 803..5152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8701.20167.1

>prot_Ecto-sp13_S_contig8701.20167.1 ID=prot_Ecto-sp13_S_contig8701.20167.1|Name=mRNA_Ecto-sp13_S_contig8701.20167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
MKAIQCAPVLLCAMAVDSFHVPVPLSTISRSVVPCSVRQHQLLLLSAKRR
GEGIEPEEPLFEGPILLPPADYTKPGRVVNLQGDDDGAEVGHVMLNRKIT
LSFTCNVCDGHNTHQLDFPEFGRNLEEFMAKKGTPVKRVVMDRDGLSHVQ
VAVPGKDYPEVNPHLVTRDEDEEEALREGFDAMSLLPGAHVGGAGYLPGV
PPPPPPLREEVGGAGDGEDVVDGEWEEDVVDGPPDV*
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mRNA from alignment at Ecto-sp13_S_contig8701:803..5963+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8701.20167.1 ID=mRNA_Ecto-sp13_S_contig8701.20167.1|Name=mRNA_Ecto-sp13_S_contig8701.20167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8701:803..5963+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCAATCCAATGTGCCCCTGTACTCCTTTGTGCCATGGCAGTGGA
CTCGTTTCATGTCCCGGTACCGCTCAGTACCATCAGCAGAAGTGTCGTTC
CATGTTCTGTGCGACAACACCAGCTGCTCTTGCTGTCGGCGAAACGGAGA
GGTGAAGGTATCGAACCGGAGGAACCCCTTTTCGAGGGACCTATCCTACT
GCCTCCTGCCGATTACACCAAGCCTGGACGAGTGGTGAACTTGGTGAGTT
TATTGCTTTTGGGACGTGTCGAATGCTGCACGCTGTCTTGTTGTCTTTTG
AATCTGGCTCTCCTATCGAGCTGCGTGTATAGCCTACAGCAGTGGGCAGC
GTGAGAGGCATCACGTACACCTGCCGGCCAGTTCCCGTGACCAGCAGTAG
TACAGCAGGAACCCGCCCGTTGACGTCTGTAGGCATGCATTTCACACCTC
AAATCGCGCATGAAAGCGCTGGAGATAAGTATTCATATGTCCAAATCCTA
CCAAGGTGAGACACAGCTGTTGTTGCACTTGTAGTTGCGCCGCATATCGA
ATATCGGAGTGTTACCGTCGGTGACAGAATAGACCACACCCCGGACCGAT
TTTCGAAAGTGACTCCAAAGCAGAATCAGCAGTGGCGCCAAAAATGGCGG
CGTTGGAATCGTGTCGTCCAGATCTTCCCGAAAACGTATCCTTTGATGTT
TGCGTACTCTTCGTCGTGGAGTAATCGAGCTTTGAAATCAGTCCGGGGGG
GGTGGTATATTGTGTCACCTCCGGCCGTGGTAGCTGCTTCGCCGAGAAAA
ACGAGCGAAAAGGACCGCGTCGCATGTTCTGAACGCGTCATCCTGGGTCG
GGTGGTTACAGCGGGCAGCAGGTTCCTTCGCCCCTTTCCCCCTTGGTGTG
GGTCACGACGACTCGCGCAACAAGAGCGTTTTCTATGCTTCTAAGCGCAT
TGCGACAAGAAACGCTTGCGTTCTTCACCGTGTATCTTGCAGTCTTTCTT
ACACATCGCCAGGAACCTTTACATCGTGCAGAAGCCTCAAACAGACGCCA
AGGGAAGGGGACCTACCTGCCTGTAGTGTCTCGGGATATAGCAACTCCAA
ACCCTCTTACAACTCATTCAGCGGTATACTTTGCGCGAGGCTGGAGGCAT
TCTTCTCGCTGCAGCTGTTTTTGAGTTGAATGTCCCCTCCAGTAGTTGCG
CTTATTCTTCTGAACACGAGAAAACAAGATATCTGCTGGCCCTTTGGGGC
GTTGCTTCTGTCACTCTTATTTTACTCCCTGTCGACTGCATGCTGGGGGC
CGTTTTCCCCCAGGGCTTGTACGAACATTCCTTTTTCCAAAGCTACATCT
CCCTTGAGAATTTATTTGTTGTCGCCTCCGAAGCTCGAAGTGTACGACCG
TTGCTCTGCCGATAATCATCGGTACGTAGGTACAAAGCTTAGGACAAGCA
CAGACACGTTTTGTTTAGGGTGTTCTCCGCCCATTGCTAAAATACCAAGC
CCCGCTATGTCGATATCTACACCGACACAACTACCCGTTTCTCTAATGAA
AGGATGAACGAGAGAAGGAGGGGCCGAGGTGCCAAAACTAATGTAGATGG
GGGGGGGGGGGGGGGGTGTTTGGCATGGTCGGACTGCGGAATATGAATAT
ACGCTTGTACCAAATGCGGCGGGAAGGATTGCTTGGTGTTGGCTGTAGAT
GGGATGGTAAGGAATGGGCTCTCTCGATGCGGCGGAAAGCGATGGTTCAA
TACACGGCAATCAAAGTGAAGCGAGCGATCCAAAAGTCCGTGCAGTCGGG
CTTGCGAGCATGTAAGGTCGTGTGGGAAATAGCTTGCTGCCCTTGATGCG
ACTCGCCTTGCCGAAGGCCTCTGATAGAAATTTCGCGCCTAATCAAACAG
GGAACCTGCCTGGTCAAGATATTAACCGCCACGTTCTTGTGCCTAAGCTT
TTGGAAGCGCCGAGACTTCCTGTAATACCAACGGCACGTTACGTCATGCG
TACCCCCTCCCCCCCTCGTGCGCGCCTGGTTTCTCGGTGCATACTTTGAA
CGCATGCAAGCAGGGGGACGACGATGGGGCTGAGGTTGGTCACGTCATGT
TAAATCGCAAGATCACTCTCTCCTTCACGTGCAACGTTTGCGATGGCCAC
AACACGCACCAGGTGAGAGAGAGAGACAGAGAGAGAAAATCGAACAAAGA
AAGAAAACATGAGAGAGAGAGAGCAGCAGCGTAAGCAGCAGTCTGCCAGA
GAACTGCGAGCGTCGCTGCTGTCCCCGAATCGTTTTTCAATGTACCGGGA
AGTGGTGCAGAGTCCAGTACATGACGCATCTTGGAAGATGCCCAGTTTTC
GCGTTTGCGACTATGTTACCCTACCTTGCGGGCTTGGCACCAAAGACTTG
GGGGACCGGGGCCGTACCACGCACGATGACACTGAGTTGGAGCTCCTTGA
GGGCGCACTCGGTCCCCAACTTCGGTTTTTTGTGGTGATTTTGGAGGGCA
GGAGTGTGCTTAGCATTCCCCAGCAAGGCTTGTACAGGTAGCAGCTGTGT
CCTGGTGCATGGTCGTCTGCTTGTTGTAGGGTTACTTTATGACCCAGCGC
GTTGTCTTAGATTTGAGACCGTGTGATCGTTGTTGTTGGTACACCATTAT
GACCGCCGGAATGAGGAAAAAGCGTCACTGGCTGTCGGCAACTCCGTGTA
CTCCCCCTACAGTGTCCTTGGTTCTTGAAGACTTTTTCGTTTCCCTGCGG
ACGTACTCGACGTTTCATACCACGCCGTCTGTTGGTCACCACGTAGTGCA
ACCGCTCTCGCACGGAGCAATGCCTCAGACACCCCTCCTGTGTGCCTGCG
GACCGGGTCAAAACTTGCAATCCGCCCTCCTTCCTCGGTATCAAACGCGT
TCGCGCGTTCGCGATGGGATATAGGACTCGTAGGTTCCACCACCTATTTT
TACCTTTCCGCCGTCTTTCTCCGTTGTTAGCAGCGACGCGACTTCATGTT
GTACTCGCTGCGTGTGAGACATCAGCACGGTTCGGCTGCACCGCTCCGGT
ACAAGTGTTGTTGTTGGTGGTGTTGTTGTTATACTCGCATAAATAAAACA
TTCCGATCTCCGCTCAGTTCCTTGTTACATCCGTACCGGTTCAACTGGCG
CGGACACGTTCGGTTGTCACATGCCAATCACATGCCCCAAAAATGTCCCG
TTGACTAAACAGCTGCGTAGATGTGTGCACCGAGTGGTTCGAGTTCTTCC
GGTTTCTTCTTGTGTTGCAGTTTCACGCCCGTGATGACCCCCTCCCCCCC
CCCCCCCATCCCCTTGTTGGCCCCCCCCCCCCCCCCCCCCGGGGTTTTTT
CCTCCCTCTCTCACACCGGGCTCTCTNNNNNNNNNNCCCCCCCCCCACAT
ATCCCTGAGTGCGCCACCCCCTCCGACCCGGCGTGGTTTTCTCCTCCTGC
AGATCAACCGGGTCTCGTTCATGCAGGGCATCGTTGTACTCTGGTGCCAG
CGCTGCAACCAGAAGCATCTCATCGCAGACAACCTTGGGAAGGTGAAAAA
TGCTGCTGTGACCTTCCATGATAGGACAGATACTTTACGTTGAACGGTCT
TCGAGCTGTCGATCGCACCCTACGCAGCCACAAGACGCCGCACCACTCTT
TGATGTTCATCGCTTGGGCCAAGTTTCGTACACGTCGCCCGTTACTCGCA
CGCCTGTAATGTCACAACACGCAACCAACAGCGAGTGTTTTTCGGGAGTA
GTGAGTTTGTCGACGACTGGTGGGCCTACTCTTATCTCCATGCTGCACGT
TGAGAGCGGGGCCGCAGGGAGTACGCTGTCTCACAATGTGCAGCACGGCC
ATCATCACCGCCCCGCTAAGCCCCCCCCTTCCCTGTCTCGAAAAATACTC
TTGGTAAATTGCGAAAGGGCTCGCAACCAACCAATATTTCCACCCGCCCG
CCCGCGCTCCTCACCCCCCCCCGAAATGCGAAAGCTGGACTTTCCCGAGT
TCGGGCGCAACCTTGAGGAGTTCATGGCCAAGAAAGGCACCCCCGTCAAG
AGAGTTGTCATGGATAGGGATGGCCTCTCCCACGTCCAGGTCGCGGTGCC
GGGGAAGGACTACCCGGAGGTCAACCCGCACCTGGTCACCCGAGACGAGG
ACGAAGAGGAGGCGCTGCGCGAAGGTTTCGACGCCATGAGCCTTTTGCCC
GGTGCGCACGTGGGAGGCGCCGGCTACCTGCCGGGAGTTCCGCCTCCGCC
GCCGCCGCTCCGCGAGGAGGTTGGCGGCGCAGGGGACGGGGAGGATGTCG
TTGATGGGGAATGGGAGGAGGACGTTGTGGATGGACCGCCGGACGTTTGA
TGCTTGTGCGACTGGTACTGTTGCCGCGTGCGCGGCTCGTGTGAAGAGTC
GATTTCTGGCGGGGGCGTTTCGGCTGGACGGGCAGGCTGAAGGACGCGTC
GTGCTGCTTTGTGGTGGTTGAGCTGCGTCGGGTGAAGAGCGAGCGTGTGC
CTGAACGGAAAAATTGCTTGGGCGTTCTGATGGGCGGCTAGGGTTGTATA
CGATCGATGCTAGGAGATAGTAGCGCATTGTGCGCAACGTGTTTTGGCAT
GTAGGGGGCGGGGGTGACAGATCCGGTGGAGCGCTTCTGGCGTAGCCCCG
ATGCAAGCTGTGCATTATTTTGTACATGTTTCGCGTTGGTGCCGACGTTT
CGTACGGCTGCTCTATTCTCGAGGATGTTCTTGGCGCGATGTTTATTTTT
GTTCACAAAGGGCTACCGCCTGGTGGTGGTGAGGCCACAGGGGCCGCGCC
GTGTATGAAAATGGGTGAGTGAGTGTAGCAGAATAGTGTTCCGACGATGA
CGGTTCTCAGTTGTTGCACGTGATCCTCTTGATGGTGCGCCACTGCTCTT
GTGTCCATAGTCCAGTCAGTGGGTGTATTTGTATCAAGACGGTGGGGTTG
TGAAAATAGTGGGTCGGTGGTCGAGAAGAGGTAAAGAGTGATGTGGCAAA
GATGGGTTGAAAAATAGTAAATGCAATTATCGGGAGATTGTAGAAAGGGG
GAATGATTTCCAATGACCAGGACCTGCAGCGACCACGCTGTGGTGCGAAA
AGGTCCCGCTAGCTTCCCAGATGACGAGGGGGCATCCTTCTTCGCTACAC
GTACTACAAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8701:803..5963+

>mRNA_Ecto-sp13_S_contig8701.20167.1 ID=mRNA_Ecto-sp13_S_contig8701.20167.1|Name=mRNA_Ecto-sp13_S_contig8701.20167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8701:803..5963+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCAATCCAATGTGCCCCTGTACTCCTTTGTGCCATGGCAGTGGA
CTCGTTTCATGTCCCGGTACCGCTCAGTACCATCAGCAGAAGTGTCGTTC
CATGTTCTGTGCGACAACACCAGCTGCTCTTGCTGTCGGCGAAACGGAGA
GGTGAAGGTATCGAACCGGAGGAACCCCTTTTCGAGGGACCTATCCTACT
GCCTCCTGCCGATTACACCAAGCCTGGACGAGTGGTGAACTTGCAGGGGG
ACGACGATGGGGCTGAGGTTGGTCACGTCATGTTAAATCGCAAGATCACT
CTCTCCTTCACGTGCAACGTTTGCGATGGCCACAACACGCACCAGCTGGA
CTTTCCCGAGTTCGGGCGCAACCTTGAGGAGTTCATGGCCAAGAAAGGCA
CCCCCGTCAAGAGAGTTGTCATGGATAGGGATGGCCTCTCCCACGTCCAG
GTCGCGGTGCCGGGGAAGGACTACCCGGAGGTCAACCCGCACCTGGTCAC
CCGAGACGAGGACGAAGAGGAGGCGCTGCGCGAAGGTTTCGACGCCATGA
GCCTTTTGCCCGGTGCGCACGTGGGAGGCGCCGGCTACCTGCCGGGAGTT
CCGCCTCCGCCGCCGCCGCTCCGCGAGGAGGTTGGCGGCGCAGGGGACGG
GGAGGATGTCGTTGATGGGGAATGGGAGGAGGACGTTGTGGATGGACCGC
CGGACGTTTGA
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