prot_Ecto-sp13_S_contig870.20165.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig870.20165.1
Unique Nameprot_Ecto-sp13_S_contig870.20165.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length488
Homology
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BLAST of mRNA_Ecto-sp13_S_contig870.20165.1 vs. uniprot
Match: D7FKM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM7_ECTSI)

HSP 1 Score: 428 bits (1100), Expect = 2.630e-143
Identity = 419/462 (90.69%), Postives = 425/462 (91.99%), Query Frame = 0 
Query:   25 SSVATDGQRKEYTSGVRNDVTAQSSPXXXXXSASLQAILGISDAQAEIIRSSGQTTKTAFDNLISVSDEGARPGASVSFTQSWRPPSSCFPTFLLHELHAAPEDVKSLVLRRPVVLGWSAVAASKVSLWLQDCLGMNQSEVARLLLRHPEAGTKSVKNTVEPKVEWLRTNLNIHEADDDGVVXXXXXXXXXXXXXXXXXXXXXXXXXXERLGVSSDVAAKIARENXXXXXXXXXXXXXXXXXXXXXXXDIKDEGIVLAMVAAAPKILSLNTLTGIEPKLAWLRDSLGLNPQDVCEIIRREPTILYKSVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMRTRGIRPIFLKHLNPIIRWPDSKFQGFLEGSG 486
            SSVATDGQRK Y SGVR+DVTAQSSP     SASLQAILGISD QAEIIRSSGQTTKT FDNLISVSD G RPG +VSFT+S  PPSSCFP FLLHELHAAPEDVKSLVLRRPVVLGWSAVAA KVS WLQDCLGMNQSEVARLLLRHPEAGTKSV+NTVEPKVEWLRTNLN   ADD GVVXXXXXXXXXXXXXXXXXXXXXXXXXXERLGVS + AAKIAREN   XXXXXXXXXXXXXXXXXXXXDIKDEGIVLAMVAAAPKILSLNT TGIEPKLAWLRDSLGLNPQDVCEIIRREPT       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMR RGI+PIF KHLNPIIRWPDSKFQGFLEG G
Sbjct:    2 SSVATDGQRKGYASGVRHDVTAQSSPPPPSPSASLQAILGISDTQAEIIRSSGQTTKTGFDNLISVSDGGDRPGTNVSFTKSSPPPSSCFPRFLLHELHAAPEDVKSLVLRRPVVLGWSAVAAGKVSRWLQDCLGMNQSEVARLLLRHPEAGTKSVENTVEPKVEWLRTNLNFDAADDGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXERLGVSCEEAAKIARENPTLXXXXXXXXXXXXXXXXXXXXDIKDEGIVLAMVAAAPKILSLNTRTGIEPKLAWLRDSLGLNPQDVCEIIRREPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMRRRGIQPIFSKHLNPIIRWPDSKFQGFLEGFG 463
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig870.20165.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKM7_ECTSI2.630e-14390.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 318..350
e-value: 0.014
score: 24.5
coord: 355..387
e-value: 0.032
score: 23.4
coord: 206..238
e-value: 0.0023
score: 27.2
coord: 166..198
e-value: 17.0
score: 14.3
coord: 392..424
e-value: 2.0E-5
score: 34.0
coord: 281..313
e-value: 1.9
score: 17.5
coord: 243..275
e-value: 15.0
score: 14.5
coord: 429..460
e-value: 0.27
score: 20.3
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 158..479
e-value: 8.8E-36
score: 123.4
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 252..480
e-value: 1.2E-35
score: 125.0
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 242..459
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 242..459
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 114..239
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 114..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig870contigEcto-sp13_S_contig870:18281..20815 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig870.20165.1mRNA_Ecto-sp13_S_contig870.20165.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig870 17767..20928 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig870.20165.1 ID=prot_Ecto-sp13_S_contig870.20165.1|Name=mRNA_Ecto-sp13_S_contig870.20165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=488bp
MASSSLPLSRFRRGTRGHTGERYTSSVATDGQRKEYTSGVRNDVTAQSSP
PPPSSSASLQAILGISDAQAEIIRSSGQTTKTAFDNLISVSDEGARPGAS
VSFTQSWRPPSSCFPTFLLHELHAAPEDVKSLVLRRPVVLGWSAVAASKV
SLWLQDCLGMNQSEVARLLLRHPEAGTKSVKNTVEPKVEWLRTNLNIHEA
DDDGVVKLLLHAPQILNLSVEKSLDPLLRWLKERLGVSSDVAAKIARENP
TLFWLSVDSNLEPTLRWLLKRLDIKDEGIVLAMVAAAPKILSLNTLTGIE
PKLAWLRDSLGLNPQDVCEIIRREPTILYKSVDDNLKPKLAWLKKNLDLD
DQAAREMFVAFPRMLGSSLAENLQLKVPWLQKSLGLDSGEAAALVKRAPV
LLQYSIEDNLEPTVSFFRAEMGASTEELRGSVQRNPKILAYSLDGRLRPR
VAAMRTRGIRPIFLKHLNPIIRWPDSKFQGFLEGSGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf