mRNA_Ecto-sp13_S_contig870.20165.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig870.20165.1
Unique NamemRNA_Ecto-sp13_S_contig870.20165.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig870.20165.1 vs. uniprot
Match: D7FKM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM7_ECTSI)

HSP 1 Score: 427 bits (1099), Expect = 3.320e-140
Identity = 419/462 (90.69%), Postives = 425/462 (91.99%), Query Frame = 3 
Query:  186 SSVATDGQRKEYTSGVRNDVTAQSSPXXXXXSASLQAILGISDAQAEIIRSSGQTTKTAFDNLISVSDEGARPGASVSFTQSWRPPSSCFPTFLLHELHAAPEDVKSLVLRRPVVLGWSAVAASKVSLWLQDCLGMNQSEVARLLLRHPEAGTKSVKNTVEPKVEWLRTNLNIHEADDDGVVXXXXXXXXXXXXXXXXXXXXXXXXXXERLGVSSDVAAKIARENXXXXXXXXXXXXXXXXXXXXXXXDIKDEGIVLAMVAAAPKILSLNTLTGIEPKLAWLRDSLGLNPQDVCEIIRREPTILYKSVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMRTRGIRPIFLKHLNPIIRWPDSKFQGFLEGSG 1571
            SSVATDGQRK Y SGVR+DVTAQSSP     SASLQAILGISD QAEIIRSSGQTTKT FDNLISVSD G RPG +VSFT+S  PPSSCFP FLLHELHAAPEDVKSLVLRRPVVLGWSAVAA KVS WLQDCLGMNQSEVARLLLRHPEAGTKSV+NTVEPKVEWLRTNLN   ADD GVVXXXXXXXXXXXXXXXXXXXXXXXXXXERLGVS + AAKIAREN   XXXXXXXXXXXXXXXXXXXXDIKDEGIVLAMVAAAPKILSLNT TGIEPKLAWLRDSLGLNPQDVCEIIRREPT       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMR RGI+PIF KHLNPIIRWPDSKFQGFLEG G
Sbjct:    2 SSVATDGQRKGYASGVRHDVTAQSSPPPPSPSASLQAILGISDTQAEIIRSSGQTTKTGFDNLISVSDGGDRPGTNVSFTKSSPPPSSCFPRFLLHELHAAPEDVKSLVLRRPVVLGWSAVAAGKVSRWLQDCLGMNQSEVARLLLRHPEAGTKSVENTVEPKVEWLRTNLNFDAADDGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXERLGVSCEEAAKIARENPTLXXXXXXXXXXXXXXXXXXXXDIKDEGIVLAMVAAAPKILSLNTRTGIEPKLAWLRDSLGLNPQDVCEIIRREPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMRRRGIQPIFSKHLNPIIRWPDSKFQGFLEGFG 463
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig870.20165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKM7_ECTSI3.320e-14090.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig870contigEcto-sp13_S_contig870:17767..20928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score430.6
Seed ortholog evalue9.5e-118
Seed eggNOG ortholog2880.D7FKM7
Model size2091
KEGG koko:K15031,ko:K15032
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-09_000780.1
Cds size1464
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.2324793-UTR-Ecto-sp13_S_contig870:17766..182801681464143.2324793-UTR-Ecto-sp13_S_contig870:17766..18280Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig870 17767..18280 -
1681464143.2674258-UTR-Ecto-sp13_S_contig870:20815..209281681464143.2674258-UTR-Ecto-sp13_S_contig870:20815..20928Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig870 20816..20928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.2447894-CDS-Ecto-sp13_S_contig870:18280..196941681464143.2447894-CDS-Ecto-sp13_S_contig870:18280..19694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig870 18281..19694 -
1681464143.254568-CDS-Ecto-sp13_S_contig870:20765..208151681464143.254568-CDS-Ecto-sp13_S_contig870:20765..20815Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig870 20766..20815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig870.20165.1prot_Ecto-sp13_S_contig870.20165.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig870 18281..20815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig870.20165.1

>prot_Ecto-sp13_S_contig870.20165.1 ID=prot_Ecto-sp13_S_contig870.20165.1|Name=mRNA_Ecto-sp13_S_contig870.20165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=488bp
MASSSLPLSRFRRGTRGHTGERYTSSVATDGQRKEYTSGVRNDVTAQSSP
PPPSSSASLQAILGISDAQAEIIRSSGQTTKTAFDNLISVSDEGARPGAS
VSFTQSWRPPSSCFPTFLLHELHAAPEDVKSLVLRRPVVLGWSAVAASKV
SLWLQDCLGMNQSEVARLLLRHPEAGTKSVKNTVEPKVEWLRTNLNIHEA
DDDGVVKLLLHAPQILNLSVEKSLDPLLRWLKERLGVSSDVAAKIARENP
TLFWLSVDSNLEPTLRWLLKRLDIKDEGIVLAMVAAAPKILSLNTLTGIE
PKLAWLRDSLGLNPQDVCEIIRREPTILYKSVDDNLKPKLAWLKKNLDLD
DQAAREMFVAFPRMLGSSLAENLQLKVPWLQKSLGLDSGEAAALVKRAPV
LLQYSIEDNLEPTVSFFRAEMGASTEELRGSVQRNPKILAYSLDGRLRPR
VAAMRTRGIRPIFLKHLNPIIRWPDSKFQGFLEGSGR*
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mRNA from alignment at Ecto-sp13_S_contig870:17767..20928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig870.20165.1 ID=mRNA_Ecto-sp13_S_contig870.20165.1|Name=mRNA_Ecto-sp13_S_contig870.20165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig870:17767..20928- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGCCGGGCGAATTGTCGAAACAGAAGTCCGACAATTGCTGCTGCAGGG
TACGGTGTGCGTCGGCTTCATCATCATCATTGCTGCTGTCGACGAGGACT
GAATCCACATGGTATGGCATCATCATCCCTGCCCCTGTCCCGGTTCAGGC
GAGGCACTCGCGGGTGAGGTCTTGAACTGTCCACACTGAGCCGTTGTGAG
GCTTTAGGCCACAATAGTCGTGCAGTTGTATCTTGAATTCGGCCGTGCGG
GTCCAAGGCGTGCATGCTGAATGAAGACTTCGGTGCAGGTGTAGTCTAGG
TGTGCAAAGCACCGCTGCACCTTCCAGACTGCTGTAAAAAAAGACGACAG
TAACACAAAGATGTTTGGGGATCGATTAGAGGGAGCGTAGACTACAGCAC
TACAGTACAGTAACTGTTTGAAATTCAAAAATGTAGATTCAACAGTAAAT
AAACCAGCAAGCTATCAATCGACACTGCCCCGCGTGTTCCCTGTGAAGGT
CAAATTGTATTTACACACATGACTTTGGGATTCTCCCCGATATTTTCGTC
GTTAACCCAGTAGAGAACTACAGAGGATGTAAATGTATCTACCTGTGCTG
ATGCTTTTTGTACTTAAGCACCAGCTGGTATTACTGGAATGGTGCAGTGT
AAAGGCTTGAACACACTCAAAAATAAGCACAGATTCCAGCCGGTTTCCCT
CCACTCACTGAAAAGACTTCAGCACATCCCTCTCGACGGTATATATATCT
CGAATCTCGAACGGGTAGGTGCATTTCTTCAAAAAATAAAGAGTTCGAGG
ATGTGGGGCGGTGGTAAGAAGCTCGTGCAGTGTTTTCACCTAGTTTTATC
AAAGCACGAGATGCCACAATCTGCTGTACCACTGCTGTACTTGCACTTTC
TCCATCGATGCCATGCTGGCCGTATGTACTGCAAGCCCGGGTGTGTGCCC
CACAGCAGTGCACTGTAGCACAGCAACCCTAGCGAAAGCTAGCAGCTACC
ATCTTCAAGTTGTTGCCAGGAACGGGCGGTCAAACACGTTCAACTCCTTA
TTGCCCTACGGCTTCTTTCCTCTAGACCCTTTTCCAACGACATCATCTGT
TTCCCAGTCGACGCATACCATTACCACTGCGACTTTATGGCGACCGCTTC
TTCTGGTCCTATCCATGGCAAGTATTGCTGTCACAGAATGTCATTCTAAT
GCGTACATGCTATCGTGTGTTGCTGTTGTACCAGACACACCGGCGAGCGC
TACACGTCCTCTGTCGCCACTGATGGGCAAAGGAAGGAATACACTTCCGG
TGTCCGCAACGACGTCACAGCGCAGTCGTCACCACCACCACCATCTTCAT
CGGCCTCACTGCAGGCGATTCTTGGAATATCGGACGCACAGGCCGAGATC
ATAAGGAGCTCGGGACAAACCACCAAGACAGCTTTCGACAACCTCATTTC
CGTCAGCGATGAGGGCGCCAGGCCAGGTGCTAGCGTAAGCTTCACCCAGT
CGTGGCGGCCCCCTTCTTCCTGCTTCCCCACATTCCTGCTCCACGAACTC
CACGCGGCTCCAGAAGATGTGAAATCTCTCGTGCTTCGAAGGCCCGTCGT
TCTCGGTTGGTCAGCGGTGGCTGCGAGTAAGGTTTCGCTTTGGCTCCAGG
ATTGTTTGGGGATGAACCAATCCGAGGTTGCGCGGTTGCTTCTGAGGCAC
CCAGAAGCGGGAACGAAAAGCGTCAAGAATACCGTGGAGCCCAAGGTGGA
GTGGCTACGCACAAACCTCAACATTCACGAAGCGGACGACGATGGTGTGG
TCAAACTACTCTTACATGCACCGCAGATCTTGAATCTGAGCGTTGAAAAG
TCTTTGGATCCTTTGCTGCGGTGGCTGAAGGAACGTTTGGGGGTTTCGAG
TGACGTCGCGGCCAAGATCGCTCGCGAGAATCCGACCCTCTTCTGGCTCA
GCGTGGACAGCAACCTCGAGCCCACTCTGAGGTGGCTGCTTAAGCGGCTC
GACATCAAGGACGAGGGAATCGTCCTCGCTATGGTAGCAGCCGCTCCGAA
GATCCTCTCCTTGAACACCCTCACCGGGATAGAGCCCAAGCTGGCTTGGC
TGAGGGATAGCCTAGGCTTGAATCCCCAGGACGTCTGCGAGATTATCCGC
AGGGAGCCGACCATCCTCTACAAGAGCGTCGACGACAACTTGAAACCAAA
GCTGGCCTGGTTGAAGAAGAACCTAGATCTCGACGATCAGGCGGCTCGGG
AGATGTTTGTTGCCTTCCCAAGGATGTTGGGGTCAAGCCTCGCCGAGAAC
CTTCAGCTCAAGGTCCCGTGGCTGCAGAAGTCGCTTGGTTTAGACTCAGG
AGAGGCGGCAGCCTTAGTAAAGCGAGCCCCGGTGCTCCTGCAGTACAGCA
TCGAGGACAACCTGGAACCGACGGTTTCATTTTTTCGGGCGGAAATGGGC
GCCTCCACGGAGGAGCTAAGAGGTTCAGTGCAGCGGAACCCCAAGATTCT
GGCTTACAGCTTGGACGGGCGGCTTCGACCCCGCGTGGCGGCCATGCGAA
CAAGAGGGATCCGCCCTATTTTTTTGAAACACCTGAATCCCATTATCCGT
TGGCCCGACTCCAAGTTCCAAGGATTTTTAGAAGGGAGCGGGAGATGATC
TCGTGCCCAGAAAAGGGACATGTAGACCCTATTTTTCACCAACATGCCTT
GAGCTGTGCTCTGTGCGTTTGTTACCGAAACCCCTTTCACATGTATCAGG
AAGAGTTCAAACCATCCTACATCTTTGTTTTGCTCAAAATACCAATGATT
GAAATTTCGTGGTCTAGTGTCCCCTCGAGGAAGGGCGGGCATTGCTTGGC
AGCTGGGTGTGTTTGAGAACTATCATAGCGTTCAAGACGTTCGTACGGAT
GTAAGGGGGTGCTGAGCAGACGACTGAACGGTTTTTAGTTTGAAAGTCGA
CAACAACTACACCATCGTTCCGCAGGCACCGGATATCCTCTGAAAAGCAT
ATTATTCGCCGTTTGTCGGGTTGTCCCAGGTGGAGAGTCGGTATGCTTTT
TCAGTGTATGCCTAAGTGACTCTCAAACATGTGGCTTAAGTAAGGGGGCC
TTTTGAAACCGCTTGCGGCATGAAGCTGACACTGCTGTGGTGATGAAAGT
AGTAGTTCGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig870:17767..20928-

>mRNA_Ecto-sp13_S_contig870.20165.1 ID=mRNA_Ecto-sp13_S_contig870.20165.1|Name=mRNA_Ecto-sp13_S_contig870.20165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig870:17767..20928- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATCATCATCCCTGCCCCTGTCCCGGTTCAGGCGAGGCACTCGCGG
ACACACCGGCGAGCGCTACACGTCCTCTGTCGCCACTGATGGGCAAAGGA
AGGAATACACTTCCGGTGTCCGCAACGACGTCACAGCGCAGTCGTCACCA
CCACCACCATCTTCATCGGCCTCACTGCAGGCGATTCTTGGAATATCGGA
CGCACAGGCCGAGATCATAAGGAGCTCGGGACAAACCACCAAGACAGCTT
TCGACAACCTCATTTCCGTCAGCGATGAGGGCGCCAGGCCAGGTGCTAGC
GTAAGCTTCACCCAGTCGTGGCGGCCCCCTTCTTCCTGCTTCCCCACATT
CCTGCTCCACGAACTCCACGCGGCTCCAGAAGATGTGAAATCTCTCGTGC
TTCGAAGGCCCGTCGTTCTCGGTTGGTCAGCGGTGGCTGCGAGTAAGGTT
TCGCTTTGGCTCCAGGATTGTTTGGGGATGAACCAATCCGAGGTTGCGCG
GTTGCTTCTGAGGCACCCAGAAGCGGGAACGAAAAGCGTCAAGAATACCG
TGGAGCCCAAGGTGGAGTGGCTACGCACAAACCTCAACATTCACGAAGCG
GACGACGATGGTGTGGTCAAACTACTCTTACATGCACCGCAGATCTTGAA
TCTGAGCGTTGAAAAGTCTTTGGATCCTTTGCTGCGGTGGCTGAAGGAAC
GTTTGGGGGTTTCGAGTGACGTCGCGGCCAAGATCGCTCGCGAGAATCCG
ACCCTCTTCTGGCTCAGCGTGGACAGCAACCTCGAGCCCACTCTGAGGTG
GCTGCTTAAGCGGCTCGACATCAAGGACGAGGGAATCGTCCTCGCTATGG
TAGCAGCCGCTCCGAAGATCCTCTCCTTGAACACCCTCACCGGGATAGAG
CCCAAGCTGGCTTGGCTGAGGGATAGCCTAGGCTTGAATCCCCAGGACGT
CTGCGAGATTATCCGCAGGGAGCCGACCATCCTCTACAAGAGCGTCGACG
ACAACTTGAAACCAAAGCTGGCCTGGTTGAAGAAGAACCTAGATCTCGAC
GATCAGGCGGCTCGGGAGATGTTTGTTGCCTTCCCAAGGATGTTGGGGTC
AAGCCTCGCCGAGAACCTTCAGCTCAAGGTCCCGTGGCTGCAGAAGTCGC
TTGGTTTAGACTCAGGAGAGGCGGCAGCCTTAGTAAAGCGAGCCCCGGTG
CTCCTGCAGTACAGCATCGAGGACAACCTGGAACCGACGGTTTCATTTTT
TCGGGCGGAAATGGGCGCCTCCACGGAGGAGCTAAGAGGTTCAGTGCAGC
GGAACCCCAAGATTCTGGCTTACAGCTTGGACGGGCGGCTTCGACCCCGC
GTGGCGGCCATGCGAACAAGAGGGATCCGCCCTATTTTTTTGAAACACCT
GAATCCCATTATCCGTTGGCCCGACTCCAAGTTCCAAGGATTTTTAGAAG
GGAGCGGGAGATGA
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