prot_Ecto-sp13_S_contig8696.20156.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8696.20156.1
Unique Nameprot_Ecto-sp13_S_contig8696.20156.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length415
Homology
BLAST of mRNA_Ecto-sp13_S_contig8696.20156.1 vs. uniprot
Match: A0A6H5JQW7_9PHAE (PAP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQW7_9PHAE)

HSP 1 Score: 598 bits (1543), Expect = 1.500e-207
Identity = 361/403 (89.58%), Postives = 369/403 (91.56%), Query Frame = 0
Query:   21 MCGGERDGRVLSRQRTSTHSAWVSLPPSHTGFGGSSSTAPTTSPRGAAPRPSARDGSSSVAQLLPSRKRRIAAALFYSLRDRRHGPAEAAAGETVVPGLPSTSSPFLARLGGAAHHARGRCARGFQLGAVTAVRSPGDGGAATAVEGGEELKEAFNAAVGEEEFLGLDGFRALADVRELLEDGLLRDSEVLAIWKAVPKADPARDRVDFVGFSQAFARVDALFEEEXXXXX--------EEGVAEAGTSRGGGGSGVAVGPGETEASFVELVGSSEGVLDLDGLLRWSEVTELFEEGLLKQEEVEQMWEGLPKVANRVQAAGEAGTEEGMLINLAGFMEFDRQLSDLFEDEEDNGTDAXXXXXXXXXXXXXXXXXXXXXXXXXXXVAATAPASPEAMDLAGKE 415
            MCGGE DGRVLS QRTS HSAWVSL PSH  FGGS STA TTSP GAAPRPSARDGSSSVAQLLPSRKRRIAAALFYSLRD+RHGPAEAAA ETVVPGLP  SSPFLARLGGAAHHARGRCA GFQLGAVTAVRSPGDGGAATAVEGGEEL+EAFNAAVG+EEFLGLDGFRALADVRELLEDGLLRDSEVLAIWKAVPKADPA DRVDFVGFSQAF+RVDALFEE XXXXX        E  VAEAGT+RGGG SG AVGPGETEASFVELVGSSEGVLDLDGLLRWSEVTELFEEGLL QEEVEQMWEGLPKVANRVQAAGEAGTEEGMLINLAGF+EFDRQLSDLFEDEE++GTDA     XXXXXXXXXXXXXXXXXXXXX VAATAPASPEAMDLAGKE
Sbjct:    1 MCGGEGDGRVLSSQRTSAHSAWVSLTPSHIAFGGSGSTATTTSPWGAAPRPSARDGSSSVAQLLPSRKRRIAAALFYSLRDQRHGPAEAAARETVVPGLPPISSPFLARLGGAAHHARGRCAGGFQLGAVTAVRSPGDGGAATAVEGGEELREAFNAAVGDEEFLGLDGFRALADVRELLEDGLLRDSEVLAIWKAVPKADPAGDRVDFVGFSQAFSRVDALFEEXXXXXXXXXXXXXGEGRVAEAGTNRGGGESGGAVGPGETEASFVELVGSSEGVLDLDGLLRWSEVTELFEEGLLNQEEVEQMWEGLPKVANRVQAAGEAGTEEGMLINLAGFLEFDRQLSDLFEDEEESGTDAADQDQXXXXXXXXXXXXXXXXXXXXXVVAATAPASPEAMDLAGKE 403          
BLAST of mRNA_Ecto-sp13_S_contig8696.20156.1 vs. uniprot
Match: A0A6T7K4J5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7K4J5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 8.470e-7
Identity = 59/215 (27.44%), Postives = 100/215 (46.51%), Query Frame = 0
Query:  168 GEELKEAFNAAVGEEEFLGLDGFRALADVRELLEDGLLRDSEVLAIWKAVPK-----ADPARD-RVDFVGFSQAFARVDALFEEEXXXXXEEGVAEAGTSRGGGGSG-----------VAVGPGETEASFVELVGSSEGVLDLDGLLRWSEVTELFEEGLLKQEEVEQMWEGLPKVANRVQAAGEAGTEEGMLINLAGFMEFDRQLSDLFEDEED 365
            GE L+  F         +  +  RA+  + +LL+ G +   E+  IW A PK     AD   D R+D  GF Q +  +D LFE+          A + +S+ G  +G           +     E E +F  +  SS+ ++  + L  W E+ +L EEG+L ++E ++MW+G PK           G+ E + ++  GF+ F+  L +LF  +E+
Sbjct:   81 GEALQALFAKQCDSNGLMTKEKLRAVPAIADLLDVGDILSEELDDIWDAAPKFPDIEADAKMDERIDVDGFVQIYRDIDDLFEQGEAAETAP-AATSPSSKEGSSTGDDKEASKEVGNIEDDEDELENAFANICDSSK-LVSREALREWEEIRQLLEEGMLGEDEFDEMWKGAPK---------SPGSPEQLDVD--GFLSFNVALDELFVFDEE 282          
BLAST of mRNA_Ecto-sp13_S_contig8696.20156.1 vs. uniprot
Match: A0A7S4AVJ8_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AVJ8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.530e-6
Identity = 59/203 (29.06%), Postives = 98/203 (48.28%), Query Frame = 0
Query:  163 TAVEGGEELKEAFNAAVGEEEFLGLDGFRALADVRELLEDGLLRDSEVLAIWKAVPKADPARDRVDFVGFSQAFARVDALFEEEXXXXXEEG-----VAEAGTSRGGGGSGVAVGPGETEASFVELVGSSEGVLDLDGLLRWSEVTELFEEGLLKQEEVEQMWEGLPKVANRVQAAGEAGTEEGMLINLAGFMEFDRQLSDLF 360
            TA E  EE++E F+    E   +      ++  + ++L D  L   E+  IW+A PK+     RVD   F Q +  VD LFE++XXXXX +      V++A  +     +    G  E  +   + +    G++  D +++W E+  LFEEGLL ++E E++W+      N V    ++       ++  GF  F+  L DLF
Sbjct:  117 TATEDCEEVRELFSKYCDENFLIDRKTLASMPPIVDMLADEDLLPVELNEIWEAAPKSANDASRVDVDSFLQIYRDVDDLFEDDXXXXXGDDEISGEVSDADNTPAADANDN--GLDEELSKAYDSLCDDNGLISKDKMMQWEEIESLFEEGLLGEDEFEELWK------NSVDGENDS-------VDANGFSNFNLGLDDLF 304          
BLAST of mRNA_Ecto-sp13_S_contig8696.20156.1 vs. uniprot
Match: A0A0G4ED29_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ED29_VITBC)

HSP 1 Score: 57.0 bits (136), Expect = 4.360e-5
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 0
Query:  170 ELKEAFNAAVGEEEFLGLDGFRALADVRELLEDGLLRDSEVLAIWKAVPKADPARDRVDFVGFSQAFARVDALFE 244
            EL+E F A  G+++ + LD F  L   ++L++ G LR SEV   W+   K     D+VD +GF +A+ RVD LFE
Sbjct:  185 ELREEFKALAGKDQLMTLDQFSQLQXXQDLIQAGDLRQSEVSQAWERTEKIS-GTDKVDVMGFLEAWMRVDNLFE 258          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8696.20156.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JQW7_9PHAE1.500e-20789.58PAP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6T7K4J5_9STRA8.470e-727.44Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4AVJ8_9STRA1.530e-629.06Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A0G4ED29_VITBC4.360e-541.33Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..415
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8696contigEcto-sp13_S_contig8696:2846..6719 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8696.20156.1mRNA_Ecto-sp13_S_contig8696.20156.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8696 2846..6719 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8696.20156.1 ID=prot_Ecto-sp13_S_contig8696.20156.1|Name=mRNA_Ecto-sp13_S_contig8696.20156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=415bp
MVASRLFRTAGACLTICPFVMCGGERDGRVLSRQRTSTHSAWVSLPPSHT
GFGGSSSTAPTTSPRGAAPRPSARDGSSSVAQLLPSRKRRIAAALFYSLR
DRRHGPAEAAAGETVVPGLPSTSSPFLARLGGAAHHARGRCARGFQLGAV
TAVRSPGDGGAATAVEGGEELKEAFNAAVGEEEFLGLDGFRALADVRELL
EDGLLRDSEVLAIWKAVPKADPARDRVDFVGFSQAFARVDALFEEEEEEG
GEEGVAEAGTSRGGGGSGVAVGPGETEASFVELVGSSEGVLDLDGLLRWS
EVTELFEEGLLKQEEVEQMWEGLPKVANRVQAAGEAGTEEGMLINLAGFM
EFDRQLSDLFEDEEDNGTDAAAQDQPPTAKSTAASSPPTTPAAAAPVVAA
TAPASPEAMDLAGKE
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