mRNA_Ecto-sp13_S_contig8696.20156.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8696.20156.1 vs. uniprot
Match: A0A6H5JQW7_9PHAE (PAP protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQW7_9PHAE) HSP 1 Score: 598 bits (1543), Expect = 1.500e-207 Identity = 361/403 (89.58%), Postives = 369/403 (91.56%), Query Frame = 1
Query: 61 MCGGERDGRVLSRQRTSTHSAWVSLPPSHTGFGGSSSTAPTTSPRGAAPRPSARDGSSSVAQLLPSRKRRIAAALFYSLRDRRHGPAEAAAGETVVPGLPSTSSPFLARLGGAAHHARGRCARGFQLGAVTAVRSPGDGGAATAVEGGEELKEAFNAAVGEEEFLGLDGFRALADVRELLEDGLLRDSEVLAIWKAVPKADPARDRVDFVGFSQAFARVDALFEEEXXXXX--------EEGVAEAGTSRGGGGSGVAVGPGETEASFVELVGSSEGVLDLDGLLRWSEVTELFEEGLLKQEEVEQMWEGLPKVANRVQAAGEAGTEEGMLINLAGFMEFDRQLSDLFEDEEDNGTDAXXXXXXXXXXXXXXXXXXXXXXXXXXXVAATAPASPEAMDLAGKE 1245
MCGGE DGRVLS QRTS HSAWVSL PSH FGGS STA TTSP GAAPRPSARDGSSSVAQLLPSRKRRIAAALFYSLRD+RHGPAEAAA ETVVPGLP SSPFLARLGGAAHHARGRCA GFQLGAVTAVRSPGDGGAATAVEGGEEL+EAFNAAVG+EEFLGLDGFRALADVRELLEDGLLRDSEVLAIWKAVPKADPA DRVDFVGFSQAF+RVDALFEE XXXXX E VAEAGT+RGGG SG AVGPGETEASFVELVGSSEGVLDLDGLLRWSEVTELFEEGLL QEEVEQMWEGLPKVANRVQAAGEAGTEEGMLINLAGF+EFDRQLSDLFEDEE++GTDA XXXXXXXXXXXXXXXXXXXXX VAATAPASPEAMDLAGKE
Sbjct: 1 MCGGEGDGRVLSSQRTSAHSAWVSLTPSHIAFGGSGSTATTTSPWGAAPRPSARDGSSSVAQLLPSRKRRIAAALFYSLRDQRHGPAEAAARETVVPGLPPISSPFLARLGGAAHHARGRCAGGFQLGAVTAVRSPGDGGAATAVEGGEELREAFNAAVGDEEFLGLDGFRALADVRELLEDGLLRDSEVLAIWKAVPKADPAGDRVDFVGFSQAFSRVDALFEEXXXXXXXXXXXXXGEGRVAEAGTNRGGGESGGAVGPGETEASFVELVGSSEGVLDLDGLLRWSEVTELFEEGLLNQEEVEQMWEGLPKVANRVQAAGEAGTEEGMLINLAGFLEFDRQLSDLFEDEEESGTDAADQDQXXXXXXXXXXXXXXXXXXXXXVVAATAPASPEAMDLAGKE 403
BLAST of mRNA_Ecto-sp13_S_contig8696.20156.1 vs. uniprot
Match: A0A6T7K4J5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7K4J5_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 8.470e-7 Identity = 59/215 (27.44%), Postives = 100/215 (46.51%), Query Frame = 1
Query: 502 GEELKEAFNAAVGEEEFLGLDGFRALADVRELLEDGLLRDSEVLAIWKAVPK-----ADPARD-RVDFVGFSQAFARVDALFEEEXXXXXEEGVAEAGTSRGGGGSG-----------VAVGPGETEASFVELVGSSEGVLDLDGLLRWSEVTELFEEGLLKQEEVEQMWEGLPKVANRVQAAGEAGTEEGMLINLAGFMEFDRQLSDLFEDEED 1095
GE L+ F + + RA+ + +LL+ G + E+ IW A PK AD D R+D GF Q + +D LFE+ A + +S+ G +G + E E +F + SS+ ++ + L W E+ +L EEG+L ++E ++MW+G PK G+ E + ++ GF+ F+ L +LF +E+
Sbjct: 81 GEALQALFAKQCDSNGLMTKEKLRAVPAIADLLDVGDILSEELDDIWDAAPKFPDIEADAKMDERIDVDGFVQIYRDIDDLFEQGEAAETAP-AATSPSSKEGSSTGDDKEASKEVGNIEDDEDELENAFANICDSSK-LVSREALREWEEIRQLLEEGMLGEDEFDEMWKGAPK---------SPGSPEQLDVD--GFLSFNVALDELFVFDEE 282
BLAST of mRNA_Ecto-sp13_S_contig8696.20156.1 vs. uniprot
Match: A0A7S4AVJ8_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AVJ8_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.530e-6 Identity = 59/203 (29.06%), Postives = 98/203 (48.28%), Query Frame = 1
Query: 487 TAVEGGEELKEAFNAAVGEEEFLGLDGFRALADVRELLEDGLLRDSEVLAIWKAVPKADPARDRVDFVGFSQAFARVDALFEEEXXXXXEEG-----VAEAGTSRGGGGSGVAVGPGETEASFVELVGSSEGVLDLDGLLRWSEVTELFEEGLLKQEEVEQMWEGLPKVANRVQAAGEAGTEEGMLINLAGFMEFDRQLSDLF 1080
TA E EE++E F+ E + ++ + ++L D L E+ IW+A PK+ RVD F Q + VD LFE++XXXXX + V++A + + G E + + + G++ D +++W E+ LFEEGLL ++E E++W+ N V ++ ++ GF F+ L DLF
Sbjct: 117 TATEDCEEVRELFSKYCDENFLIDRKTLASMPPIVDMLADEDLLPVELNEIWEAAPKSANDASRVDVDSFLQIYRDVDDLFEDDXXXXXGDDEISGEVSDADNTPAADANDN--GLDEELSKAYDSLCDDNGLISKDKMMQWEEIESLFEEGLLGEDEFEELWK------NSVDGENDS-------VDANGFSNFNLGLDDLF 304
BLAST of mRNA_Ecto-sp13_S_contig8696.20156.1 vs. uniprot
Match: A0A0G4ED29_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ED29_VITBC) HSP 1 Score: 57.0 bits (136), Expect = 4.360e-5 Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query: 508 ELKEAFNAAVGEEEFLGLDGFRALADVRELLEDGLLRDSEVLAIWKAVPKADPARDRVDFVGFSQAFARVDALFE 732
EL+E F A G+++ + LD F L ++L++ G LR SEV W+ K D+VD +GF +A+ RVD LFE
Sbjct: 185 ELREEFKALAGKDQLMTLDQFSQLQXXQDLIQAGDLRQSEVSQAWERTEKIS-GTDKVDVMGFLEAWMRVDNLFE 258 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8696.20156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8696.20156.1 >prot_Ecto-sp13_S_contig8696.20156.1 ID=prot_Ecto-sp13_S_contig8696.20156.1|Name=mRNA_Ecto-sp13_S_contig8696.20156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=415bp MVASRLFRTAGACLTICPFVMCGGERDGRVLSRQRTSTHSAWVSLPPSHTback to top mRNA from alignment at Ecto-sp13_S_contig8696:2846..6719+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8696.20156.1 ID=mRNA_Ecto-sp13_S_contig8696.20156.1|Name=mRNA_Ecto-sp13_S_contig8696.20156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3874bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8696:2846..6719+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8696:2846..6719+ >mRNA_Ecto-sp13_S_contig8696.20156.1 ID=mRNA_Ecto-sp13_S_contig8696.20156.1|Name=mRNA_Ecto-sp13_S_contig8696.20156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1245bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8696:2846..6719+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |