prot_Ecto-sp13_S_contig8663.20109.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8663.20109.1
Unique Nameprot_Ecto-sp13_S_contig8663.20109.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length85
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8663.20109.1 vs. uniprot
Match: D7FMF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF9_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 8.560e-13
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0 
Query:   53 MGGLTGVSWALLVIHSIWSCALGLDMRKFWRM 84
            MGGLTGVSWALLV+HSIWS ALGLDM KFWRM
Sbjct:    1 MGGLTGVSWALLVVHSIWSFALGLDMHKFWRM 32
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8663.20109.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMF9_ECTSI8.560e-1390.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 77..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..57
NoneNo IPR availableTMHMMTMhelixcoord: 54..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8663contigEcto-sp13_S_contig8663:4969..6245 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8663.20109.1mRNA_Ecto-sp13_S_contig8663.20109.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8663 4969..6245 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8663.20109.1 ID=prot_Ecto-sp13_S_contig8663.20109.1|Name=mRNA_Ecto-sp13_S_contig8663.20109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
VLSLAAVASANEWGRADSTDSHTFNHDCSSAEVSFSRWQSEKNKEQIRGV
QQMGGLTGVSWALLVIHSIWSCALGLDMRKFWRM*
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